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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42768

An evaluation of inorganic toxicity reference values for use in assessing hazards to American robins (Turdus migratorius) An evaluation of inorganic toxicity reference values for use in assessing hazards to American robins (Turdus migratorius)

When performing screening-level and baseline risk assessments, assessors usually compare estimated exposures of wildlife receptor species with toxicity reference values (TRVs). We modeled the exposure of American robins (Turdus migratorius) to 10 elements (As, Cd, Cr, Cu, Hg, Mn, Pb, Se, Zn, and V) in spring and early summer, a time when earthworms are the preferred prey. We calculated...
Authors
W. Nelson Beyer, Bradley E. Sample

Cyanide poisoning of a Cooper’s hawk (Accipiter cooperii) Cyanide poisoning of a Cooper’s hawk (Accipiter cooperii)

A Cooper’s hawk (Accipiter cooperii) was found dead in a ditch leading from a heap leach pad at a gold mine in Nevada. Observations at autopsy included an absence of external lesions, traces of subcutaneous and coronary fat, no food in the upper gastrointestinal tract, and no lesions in the viscera. Cyanide concentrations (µg/g ww) were 5.04 in blood, 3.88 in liver, and 1.79 in brain. No...
Authors
J. Christian Franson

Detecting spatial ontogenetic niche shifts in complex dendritic ecological networks Detecting spatial ontogenetic niche shifts in complex dendritic ecological networks

Ontogenetic niche shifts (ONS) are important drivers of population and community dynamics, but they can be difficult to identify for species with prolonged larval or juvenile stages, or for species that inhabit continuous habitats. Most studies of ONS focus on single transitions among discrete habitat patches at local scales. However, for species with long larval or juvenile periods...
Authors
William R. Fields, Evan H. Campbell Grant, Winsor H. Lowe

Geomyces and Pseudogymnoascus: Emergence of a primary pathogen, the causative agent of bat white-nose syndrome Geomyces and Pseudogymnoascus: Emergence of a primary pathogen, the causative agent of bat white-nose syndrome

Geomyces and Pseudogymnoascus (Fungi, Ascomycota, Leotiomycetes, aff. Thelebolales) are closely related groups of globally occurring soil-associated fungi. Recently, these genera of fungi have received attention because a newly identified species, Pseudogymnoascus (initially classified as Geomyces) destructans, was discovered in association with significant and unusual mortality of...
Authors
Michelle L. Verant, Andrew M. Minnis, Daniel L. Lindner, David S. Blehert

Taxonomic revision of the South American catfish genus Ageneiosus (Siluriformes: Auchenipteridae) with the description of four new species Taxonomic revision of the South American catfish genus Ageneiosus (Siluriformes: Auchenipteridae) with the description of four new species

The catfish genus Ageneiosus in the exclusively Neotropical family Auchenipteridae is revised. Species of Ageneiosus are widely distributed in all major South American continental drainages except the São Francisco River basin and small rivers along the Brazilian east coast. The taxonomic revision was based on examination of available type specimens, additional museum material and...
Authors
Frank Ribeiro, Lucia H. Rapp Py-Daniel, Stephen J. Walsh

Pre-mining trace element and radiation exposure to biota from a breccia pipe uranium mine in the Grand Canyon (Arizona, USA) watershed Pre-mining trace element and radiation exposure to biota from a breccia pipe uranium mine in the Grand Canyon (Arizona, USA) watershed

The risks to wildlife and humans from uranium (U) mining in the Grand Canyon watershed are largely unknown. In addition to U, other co-occurring ore constituents contribute to risks to biological receptors depending on their toxicological profiles. This study characterizes the pre-mining concentrations of total arsenic (As), cadmium (Cd), copper (Cu), lead (Pb), mercury (Hg), nickel (Ni)...
Authors
Jo Ellen Hinck, Danielle M. Cleveland, William G. Brumbaugh, Greg Linder, Julia S. Lankton

Interaction of Francisella noatunensis subsp. orientalis with Oreochromis mossambicus bulbus arteriosus cell line Interaction of Francisella noatunensis subsp. orientalis with Oreochromis mossambicus bulbus arteriosus cell line

Francisella noatunensis subsp. orientalis (Fno) (syn. F. asiatica) is an emergent warmwater fish pathogen and the causative agent of piscine francisellosis. Although Fno causes septicemia and can live extracellularly in infected tilapia (Oreochromis spp.), the early interaction of Fno with vasculature endothelium is unknown. In the present study, we examined the interaction of wild-type...
Authors
Esteban Soto, Susan Yun, J. Lewis, Michael T. Kearney, John D. Hansen

Transcriptomic imprints of adaptation to fresh water: parallel evolution of osmoregulatory gene expression in the Alewife Transcriptomic imprints of adaptation to fresh water: parallel evolution of osmoregulatory gene expression in the Alewife

Comparative approaches in physiological genomics offer an opportunity to understand the functional importance of genes involved in niche exploitation. We used populations of Alewife (Alosa pseudoharengus) to explore the transcriptional mechanisms that underlie adaptation to fresh water. Ancestrally anadromous Alewives have recently formed multiple, independently derived, landlocked...
Authors
Jonathan P. Velotta, Jill L. Wegrzyn, Samuel Ginzburg, Lin Kang, Sergiusz J. Czesny, Rachel J. O’Neill, Stephen D. McCormick, Pawel Michalak, Eric T. Schultz

Regional patterns of Mesozoic-Cenozoic magmatism in western Alaska revealed by new U-Pb and 40Ar/39Ar ages Regional patterns of Mesozoic-Cenozoic magmatism in western Alaska revealed by new U-Pb and 40Ar/39Ar ages

In support of regional geologic framework studies, we obtained 50 new argon-40/argon-39 (40Ar/39Ar) ages and 33 new uranium-lead (U-Pb) ages from igneous rocks of southwestern Alaska. Most of the samples are from the Sleetmute and Taylor Mountains quadrangles; smaller collections or individual samples are from the Bethel, Candle, Dillingham, Goodnews Bay, Holy Cross, Iditarod, Kantishna...
Authors
Dwight Bradley, Marti L. Miller, Richard M. Friedman, Paul W. Layer, Heather A. Bleick, James V. Jones, Steven E. Box, Susan M. Karl, Nora B. Shew, Timothy S. White, Alison B. Till, Julie A. Dumoulin, Thomas K. Bundtzen, Paul B. O'Sullivan, Thomas D. Ullrich

Walrus haul-out and in water activity levels relative to sea ice availability in the Chukchi Sea Walrus haul-out and in water activity levels relative to sea ice availability in the Chukchi Sea

An animal’s energetic costs are dependent on the amount of time it allocates to various behavioral activities. For Arctic pinnipeds, the time allocated to active and resting behaviors could change with future reductions in sea ice cover and longer periods of open water. The Pacific walrus (Odobenus rosmarus divergens) is a large Arctic pinniped that rests on sea ice or land between...
Authors
Chadwick V. Jay, Rebecca L. Taylor, Anthony S. Fischbach, Mark S. Udevitz, William S. Beatty

San Francisco Bay living shorelines: Restoring Eelgrass and Olympia Oysters for habitat and shore protection San Francisco Bay living shorelines: Restoring Eelgrass and Olympia Oysters for habitat and shore protection

Living shorelines projects utilize a suite of sediment stabilization and habitat restoration techniques to maintain or build the shoreline, while creating habitat for a variety of species, including invertebrates, fish, and birds (see National Oceanic and Atmospheric Administration [NOAA] 2015 for an overview). The term “living shorelines” denotes provision of living space and support...
Authors
Katharyn E. Boyer, Chela Zabin, Susan De La Cruz, Edwin D. Grosholz, Michelle Orr, Jeremy Lowe, Marilyn Latta, Jen Miller, Stephanie Kiriakopolos, Cassie Pinnell, Damien Kunz, Julien Moderan, Kevin Stockmann, Geana Ayala, Robert Abbott, Rena Obernolte

Using resilience and resistance concepts to manage persistent threats to sagebrush ecosystems and greater sage-grouse Using resilience and resistance concepts to manage persistent threats to sagebrush ecosystems and greater sage-grouse

Conservation of imperiled species often demands addressing a complex suite of threats that undermine species viability. Regulatory approaches, such as the US Endangered Species Act (1973), tend to focus on anthropogenic threats through adoption of policies and regulatory mechanisms. However, persistent ecosystem-based threats, such as invasive species and altered disturbance regimes...
Authors
Jeanne C. Chambers, Jeremy D. Maestas, David A. Pyke, Chad S. Boyd, Mike Pellant, Amarina Wuenschel
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