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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42784

Spatiotemporal modeling of dengue fever risk in Puerto Rico Spatiotemporal modeling of dengue fever risk in Puerto Rico

Dengue Fever (DF) is a mosquito vector transmitted flavivirus and a reemerging global public health threat. Although several studies have addressed the relation between climatic and environmental factors and the epidemiology of DF, or looked at purely spatial or time series analysis, this article presents a joint spatio-temporal epidemiological analysis. Our approach accounts for both...
Authors
Gavino Puggioni, Jannelle Couret, Emily Serman, Ali S Akanda, Howard S. Ginsberg

Evidence of prevalent heat stress in Yukon River Chinook salmon Evidence of prevalent heat stress in Yukon River Chinook salmon

Migrating adult Pacific salmon (Oncorhynchus spp.) are sensitive to warm water (>18 °C), with a range of consequences from decreased spawning success to early mortality. We examined the proportion of Yukon River Chinook salmon (O. tshawytscha) exhibiting evidence of heat stress to assess the potential that high temperatures contribute to freshwater adult mortality in a northern Pacific...
Authors
Vanessa R. von Biela, Lizabeth Bowen, Stephen D. McCormick, Michael P. Carey, Daniel S. Donnelly, Shannon C. Waters-Dynes, Amy M. Regish, Sarah M. Laske, Randy J Brown, Sean Larson, Stan Zuray, Christian E. Zimmerman

Analysis of genomic sequence data reveals the origin and evolutionary separation of Hawaiian hoary bat populations Analysis of genomic sequence data reveals the origin and evolutionary separation of Hawaiian hoary bat populations

We examine the genetic history and population status of Hawaiian hoary bats (Lasiurus semotus), the most isolated bats on Earth, and their relationship to northern hoary bats (Lasiurus cinereus), through whole-genome analysis of single-nucleotide polymorphisms mapped to a de novo-assembled reference genome. Profiles of genomic diversity and divergence indicate that Hawaiian hoary bats...
Authors
Corinna A. Pinzari, Lin Kang, Pawel Michalak, Lars S Jermiin, Donald K Price, Frank Bonaccorso

Weed-suppressive bacteria effects differ in culture compared to in soils and with or without microbial competition and separation of active ingredient Weed-suppressive bacteria effects differ in culture compared to in soils and with or without microbial competition and separation of active ingredient

Weed-suppressive bacteria (WSB), specifically the D7 and ACK55 strains of Pseudomonas fluorescens, were previously reported to selectively inhibit growth of invasive annual grasses (IAGs) that have caused severe ecosystem degradation across much of the western US. However, recent studies show highly mixed evidence for WSB effectiveness in field settings. We evaluated how the...
Authors
Brynne E. Lazarus, Kevin Feris, Matthew Germino

Immune and sex-biased gene expression in the threatened Mojave desert tortoise, Gopherus agassizii Immune and sex-biased gene expression in the threatened Mojave desert tortoise, Gopherus agassizii

The immune system of ectotherms, particularly non-avian reptiles, remains poorly characterized regarding the genes involved in immune function, and their function in wild populations. We used RNA-Seq to explore the systemic response of Mojave desert tortoise (Gopherus agassizii) gene expression to three levels of Mycoplasma infection to better understand the host response to this...
Authors
Cindy Xu, Greer A. Dolby, K. Kristina Drake, Todd Esque, Kenro Kusumi

Genetic and environmental indicators of climate change vulnerability for desert bighorn sheep Genetic and environmental indicators of climate change vulnerability for desert bighorn sheep

Assessments of organisms’ vulnerability to potential climatic shifts are increasingly common. Such assessments are often conducted at the species level and focused primarily on the magnitude of anticipated climate change (i.e., climate exposure). However, wildlife management would benefit from population-level assessments that also incorporate measures of local or regional potential for...
Authors
Tyler G. Creech, Clinton W. Epps, John D. Wehausen, Rachel S. Crowhurst, Jef R. Jaeger, Kathleen Longshore, Brandon Holton, William B. Sloan, Ryan J. Monello

Acute and chronic toxicity of nickel and zinc to a laboratory cultured mayfly (Neocloeon triangulifer) in aqueous but fed exposures Acute and chronic toxicity of nickel and zinc to a laboratory cultured mayfly (Neocloeon triangulifer) in aqueous but fed exposures

Aquatic insects are poorly represented in water quality criteria, and previous studies have suggested a lack of sensitivity in acute toxicity tests despite observational studies demonstrating the contrary. Our objectives were to determine the toxicity of nickel (Ni) and zinc (Zn) to the mayfly Neocloeon triangulifer in fed acute (96-h) and chronic exposures to estimate aqueous effect
Authors
David J. Soucek, Amy Dickinson, Christan E. Schlekat, Eric Van Genderen, Edward J. Hammer

Spatial ecology and resource selection of eastern box turtles Spatial ecology and resource selection of eastern box turtles

Eastern box turtles (Terrapene carolina carolina) are widely distributed throughout the eastern United States. Although once common throughout much of its distribution, the species has experienced declines in local populations. Understanding resource selection is important for the conservation of this species; however, few data exist on resource selection for eastern box turtles in the
Authors
Katie A Harris, Joseph D. Clark, R. Dwayne Elmore, Craig A. Harper

Impact of smallmouth bass predation on subyearling fall Chinook salmon over a broad river continuum Impact of smallmouth bass predation on subyearling fall Chinook salmon over a broad river continuum

Smallmouth bass (Micropterus dolomieu) predation on subyearling fall Chinook salmon (Oncorhynchus tshawytscha) was examined in the Snake River (USA) to identify seasonal and habitat-related changes in bass diets, and associated subyearling consumption and loss in various riverine and impounded reaches. Smallmouth bass diets reflected opportunistic foraging that at times showed predation...
Authors
Kenneth F. Tiffan, John M Erhardt, Rulon J. Hemingway, Brad Bickford, Tobyn Rhodes

High‐resolution dynamically downscaled rainfall and temperature projections for ecological life zones within Puerto Rico and for the U.S. Virgin Islands High‐resolution dynamically downscaled rainfall and temperature projections for ecological life zones within Puerto Rico and for the U.S. Virgin Islands

The weather research and forecasting (WRF) model and a combination of the regional spectral model (RSM) and the Japanese Meteorological Agency Non‐Hydrostatic Model (NHM) were used to dynamically downscale selected CMIP5 global climate models to provide 2‐km projections with hourly model output for Puerto Rico and the U.S. Virgin Islands. Two 20‐year time slices were downscaled for...
Authors
Jared H. Bowden, Adam J. Terando, Vasu Misra, Adrienne Wootten, Amit Bhardwaj, Ryan Boyles, William A. Gould, Jaime A. Collazo, Tanya Spero

2,200-Year tree-ring and lake-sediment based snowpack reconstruction for the northern Rocky Mountains highlights the historic magnitude of recent snow drought 2,200-Year tree-ring and lake-sediment based snowpack reconstruction for the northern Rocky Mountains highlights the historic magnitude of recent snow drought

In recent decades, Rocky Mountain accumulated snowpack levels have experienced rapid declines, yet long-term records of snowpack prior to the installation of snowpack observation stations in the early and mid 20th century are limited. To date, a small number of tree-ring based reconstructions of April 1 Snow Water Equivalent (SWE) in the northern Rocky Mountains have extended modern...
Authors
Spruce W. Schoenemann, Justin T. Martin, Gregory T. Pederson, David B. McWethy

Identifying sustainable winter habitat for whooping cranes Identifying sustainable winter habitat for whooping cranes

The only self-sustaining population of endangered whooping cranes (Grus americana) requires a network of conservation lands for wintering along the Texas Gulf Coast (USA), so that this increasing population can reach downlisting under the Endangered Species Act (1,000 birds). We identify locations providing the highest quality and most sustainable wintering habitat for these whooping...
Authors
Kristine L. Metzger, Sarah E. Lehnen, Steven Sesnie, Matthew J Butler, Aaron T. Pearse, Grant Harris
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