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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42704

Conservation genomics in the sagebrush sea: Population divergence, demographic history, and local adaptation in sage-grouse (Centrocercus spp.) Conservation genomics in the sagebrush sea: Population divergence, demographic history, and local adaptation in sage-grouse (Centrocercus spp.)

Sage-grouse are two closely related iconic species of the North American West, with historically broad distributions across sagebrush-steppe habitat. Both species are dietary specialists on sagebrush during winter, with presumed adaptations to tolerate the high concentrations of toxic secondary metabolites that function as plant chemical defenses. Marked range contraction and declining...
Authors
Kevin P Oh, Cameron L. Aldridge, Jennifer S. Forbey, Carolyn Dadabay, Sara J. Oyler-McCance

Negative frequency-dependent foraging behaviour in a generalist herbivore (Alces alces) and its stabilizing influence on food-web dynamics Negative frequency-dependent foraging behaviour in a generalist herbivore (Alces alces) and its stabilizing influence on food-web dynamics

1. Resource selection is widely appreciated to be context‐dependent and shaped by both biological and abiotic factors. However, few studies have empirically assessed the extent to which selective foraging behaviour is dynamic and varies in response to environmental conditions for free‐ranging animal populations. 2. Here, we assessed the extent that forage selection fluctuated in response...
Authors
Sarah R. Hoy, John A. Vucetich, Rongsong Liu, Don DeAngelis, Rolf O. Peterson, Leah M. Vucetich, John J. Henderson

Development and characterization of polymorphic microsatellite markers in Northern Fulmar, Fulmarus glacialis (Procellariformes), and cross-species amplification in eight other seabirds Development and characterization of polymorphic microsatellite markers in Northern Fulmar, Fulmarus glacialis (Procellariformes), and cross-species amplification in eight other seabirds

Background In the North Pacific, northern fulmar (Fulmarus glacialis) forms extensive colonies in few locales, which may lead to limited gene flow and locale-specific population threats. In the Atlantic, there are thousands of colonies of varying sizes and in Europe the species is considered threatened. Prior screens and classical microsatellite development in fulmar failed to provide a...
Authors
Megan C. Gravley, George K. Sage, Andrew M. Ramey, Scott A. Hatch, Verena A. Gill, Jolene R. Rearick, Aevar Petersen, Sandra L. Talbot

Evidence for a role of arginine vasotocin (AVT) receptors in the gill during salinity acclimation by a euryhaline teleost fish Evidence for a role of arginine vasotocin (AVT) receptors in the gill during salinity acclimation by a euryhaline teleost fish

The neurohypophysial nonapeptide arginine vasotocin (AVT) plays a role in regulation of osmotic balance in teleost fishes, but its mechanisms of action are not fully understood. Recently, is was discovered that nonapeptide receptors differentiated into V1a-type, several V2-type, and two isotocin (IT) receptor paralogs in teleost fishes, and it remains unclear which of these nonapeptide...
Authors
Sean C. Lema, Elise H Washburn, Mary E Crowley, Paul G Carvalho, Jennifer N Egelston, Stephen D. McCormick

A three-pipe problem: Dealing with complexity to halt amphibian declines A three-pipe problem: Dealing with complexity to halt amphibian declines

Natural resource managers are increasingly faced with threats to managed ecosystems that are largely outside of their control. Examples include land development, climate change, invasive species, and emerging infectious diseases. All of these are characterized by large uncertainties in timing, magnitude, and effects on species. In many cases, the conservation of species will only be...
Authors
Sarah J. Converse, Evan H. Campbell Grant

Mismatches between breeding phenology and resource abundance of resident alpine ptarmigan negatively affect chick survival Mismatches between breeding phenology and resource abundance of resident alpine ptarmigan negatively affect chick survival

1. Phenological mismatches – defined here as the difference in reproductive timing of an individual relative to the availability of its food resources – occur in many avian species. Mistiming breeding activities in environments with constrained breeding windows may have severe fitness costs due to reduced opportunities for repeated breeding attempts. Therefore, species occurring in...
Authors
Gregory T Wann, Cameron L. Aldridge, Amy E. Seglund, Sara J. Oyler-McCance, Boris C. Kondratieff, Clait E. Braun

Conservation research across scales in a national program: How to be relevant to local management yet general at the same time Conservation research across scales in a national program: How to be relevant to local management yet general at the same time

Successfully addressing complex conservation problems requires attention to pattern and process at multiple spatial scales. This is challenging from a logistical and organizational perspective. In response to indications of worldwide declines in amphibian populations, the Amphibian Research and Monitoring Initiative (ARMI) of the United States Geological Survey was established in 2000...
Authors
Michael J. Adams, Erin L. Muths

Global phylodynamic analysis of avian paramyxovirus-1 provides evidence of inter-host transmission and intercontinental spatial diffusion Global phylodynamic analysis of avian paramyxovirus-1 provides evidence of inter-host transmission and intercontinental spatial diffusion

Background Avian avulavirus (commonly known as avian paramyxovirus-1 or APMV-1) can cause disease of varying severity in both domestic and wild birds. Understanding how viruses move among hosts and geography would be useful for informing prevention and control efforts. A Bayesian statistical framework was employed to estimate the evolutionary history of 1602 complete fusion gene APMV-1...
Authors
Joseph T. Hicks, Kiril M. Dimitrov, Claudio L. Afonso, Andrew M. Ramey, Justin Bahl

Planning for ecological drought: Integrating ecosystem services and vulnerability assessment Planning for ecological drought: Integrating ecosystem services and vulnerability assessment

As research recognizes the importance of ecological impacts of drought to natural and human communities, drought planning processes need to better incorporate ecological impacts. Drought planning currently recognizes the vulnerability of some ecological impacts from drought (e.g., loss of instream flow affecting fish populations). However, planning often does not identify all the...
Authors
Nejem Raheem, Amanda E. Cravens, Molly S. Cross, Shelley D. Crausbay, Aaron R. Ramirez, Jamie McEvoy, Dionne Zoanni, Deborah J. Bathke, Michael Hayes, Shawn Carter, Madeleine Rubenstein, Ann Schwend, Kimberly R. Hall, Paul Suberu

A comparison of riparian vegetation sampling methods along a large, regulated river A comparison of riparian vegetation sampling methods along a large, regulated river

Monitoring riparian vegetation cover and species richness is an important component of assessing change and understanding ecosystem processes. Vegetation sampling methods determined to be the best option in other ecosystems (e.g., desert grasslands and arctic tundra) may not be the best option in multilayered, species rich, heterogeneous riparian vegetation. This study examines the...
Authors
Emily C. Palmquist, Sarah Sterner, Barbara Ralston

Evidence of Culiseta mosquitoes as vectors for Plasmodium parasites in Alaska Evidence of Culiseta mosquitoes as vectors for Plasmodium parasites in Alaska

Mosquito vectors play a crucial role in the distribution of avian Plasmodium parasites worldwide. At northern latitudes, where climate warming is most pronounced, there are questions about possible changes in the abundance and distribution of Plasmodium parasites, their vectors, and their impacts to avian hosts. To better understand the transmission of Plasmodium among local birds and to...
Authors
Matthew M. Smith, Caroline R. Van Hemert, Colleen M. Handel

San Francisco Bay triennial bird egg monitoring program for contaminants, California—2018 San Francisco Bay triennial bird egg monitoring program for contaminants, California—2018

The Regional Monitoring Program for Water Quality in San Francisco Bay (RMP), administered by the San Francisco Estuary Institute, is a large-scale effort to monitor contaminant trends in water, sediment, fish, and birds throughout San Francisco Bay (San Francisco Estuary Institute, 2016). As part of the RMP and the U.S. Geological Survey (USGS) long-term Wildlife Contaminants Program...
Authors
Joshua T. Ackerman, C. Alex Hartman, Mark P. Herzog, Matthew Toney
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