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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42871

Updated statewide abundance estimates for the Florida manatee Updated statewide abundance estimates for the Florida manatee

Knowing how many manatees live in Florida is critical for conservation and management of this threatened species. Martin et al. (2015) flew aerial surveys in 2011–2012 and estimated abundance in those years using advanced techniques that incorporated multiple data sources. We flew additional aerial surveys in 2015–2016 to count manatees and again applied advanced statistical techniques...
Authors
Jeffrey A. Hostetler, Holly H. Edwards, Julien Martin, Paul Schueller

Changes in aquatic prey resources in response to estuary restoration in Willapa Bay, southwestern Washington Changes in aquatic prey resources in response to estuary restoration in Willapa Bay, southwestern Washington

Executive Summary The ongoing restoration of more than 200 hectares of estuarine habitat at Willapa National Wildlife Refuge, southwestern Washington, is expected to benefit a variety of species, including salmonids that use estuarine and tidal marshes as rearing and feeding areas as well as migratory waterbirds. During March–June 2014 and 2015, U.S. Geological Survey Western Ecological...
Authors
Isa Woo, Melanie J. Davis, Susan E.W. De La Cruz

Estimating occurrence, prevalence, and detection of amphibian pathogens: Insights from occupancy models Estimating occurrence, prevalence, and detection of amphibian pathogens: Insights from occupancy models

Understanding the distribution of pathogens across landscapes and their prevalence within host populations is a common aim of wildlife managers. Despite the need for unbiased estimates of pathogen occurrence and prevalence for planning effective management interventions, many researchers fail to account for imperfect pathogen detection. Instead raw data are often reported, which may lead...
Authors
B. A. Mosher, Adrianne Brand, ANM Wiewel, D. A. W. Miller, MT Gray, Debra L. Miller, Evan H. Campbell Grant

Survival and drifting patterns of grass carp eggs and larvae in response to interactions with flow and sediment in a laboratory flume Survival and drifting patterns of grass carp eggs and larvae in response to interactions with flow and sediment in a laboratory flume

A series of laboratory experiments was conducted to better understand the behavior of grass carp eggs and larvae in moving water in order to develop and implement new strategies for control and prediction of their dispersal and drift at early life stages. Settling velocity and density of a representative sample of eggs were estimated, and three trials of flume experiments with different...
Authors
Andres F. Prada, Amy E. George, Benjamin H. Stahlschmidt, Duane Chapman, Rafael O. Tinoco

A natural‐origin steelhead population's response to exclusion of hatchery fish A natural‐origin steelhead population's response to exclusion of hatchery fish

It is asserted that reduction or elimination of hatchery stocking will increase natural‐origin salmon Oncorhynchus spp. and steelhead O. mykiss production. We conducted an analysis of steelhead population census data (1958–2017) to determine whether elimination of summer steelhead stocking in the upper Clackamas River in 1998 increased the productivity of natural‐origin winter steelhead...
Authors
Ian I Courter, Garth J Wyatt, Russell Perry, John Plumb, Forrest M Carpenter, Nicklaus K Ackerman, Robert B Lessard, Peter F Galbreath

Sympatry or syntopy? Investigating drivers of distribution and co‐occurrence for two imperiled sea turtle species in Gulf of Mexico neritic waters Sympatry or syntopy? Investigating drivers of distribution and co‐occurrence for two imperiled sea turtle species in Gulf of Mexico neritic waters

Animals co‐occurring in a region (sympatry) may use the same habitat (syntopy) within that region. A central aim in ecology is determining what factors drive species distributions (i.e., abiotic conditions, dispersal limitations, and/or biotic interactions). Assessing the degree of biotic interactions can be difficult for species with wide ranges at sea. This study investigated the...
Authors
Kristen M. Hart, Autumn R. Iverson, Ikuko Fujisaki, Margaret M. Lamont, David N. Bucklin, Donna J. Shaver

Evaluating consumptive and nonconsumptive predator effects on prey density using field times series data Evaluating consumptive and nonconsumptive predator effects on prey density using field times series data

Determining the degree to which predation affects prey abundance in natural communities constitutes a key goal of ecological research. Predators can affect prey through both consumptive effects (CEs) and nonconsumptive effects (NCEs), although the contributions of each mechanism to the density of prey populations remain largely hypothetical in most systems. Common statistical methods...
Authors
John A. Marino, Scott D. Peacor, David Bunnell, Henry A. Vanderploeg, Steven A. Pothoven, Ashley K. Elgin, James R. Bence, J. Jiao, Edward L. Ionides

Survey of Arctic Alaskan wildlife for influenza A antibodies: Limited evidence for exposure of mammals Survey of Arctic Alaskan wildlife for influenza A antibodies: Limited evidence for exposure of mammals

Influenza A viruses (IAVs) are maintained in wild waterbirds and have the potential to infect a broad range of species, including wild mammals. The Arctic Coastal Plain of Alaska supports a diverse suite of species, including waterfowl that are common hosts of IAVs. Mammals co-occur with geese and other migratory waterbirds during the summer breeding season, providing a plausible...
Authors
Caroline R. Van Hemert, Timothy J. Spivey, Brian D. Uher-Koch, Todd C. Atwood, David R. Sinnett, Brandt W. Meixell, Jerry W. Hupp, Kaijun Jiang, Layne G. Adams, David D. Gustine, Andrew M. Ramey, Xiu-Feng Wan

Regeneration and expansion of Quercus tomentella (island oak) groves on Santa Rosa Island Regeneration and expansion of Quercus tomentella (island oak) groves on Santa Rosa Island

Quercus tomentella (island oak) is an endemic species that plays a key functional role in Channel Island ecosystems. Growing in groves on highland ridges, Q. tomentella captures fog and increases water inputs, stabilizes soils, and provides habitat for flora and fauna. This cloud forest system has been impacted by a long history of ranching, and restoration efforts are underway that...
Authors
Jay Woolsey, Cause Hanna, Kathryn McEachern, Sean Anderson, Brett D. Hartman

Congruent population genetic structure but differing depths of divergence for three alpine stoneflies with similar ecology and geographic distributions Congruent population genetic structure but differing depths of divergence for three alpine stoneflies with similar ecology and geographic distributions

Comparative population genetic studies provide a powerful means for assessing the degree to which evolutionary histories may be congruent among taxa while also highlighting the potential for cryptic diversity within existing species.In the Rocky Mountains, three confamilial stoneflies (Zapada glacier , Lednia tumana , and Lednia tetonica ; Plecoptera, Nemouridae) occupy cold alpine...
Authors
Scott Hotaling, J. Joseph Giersch, Debra S. Finn, Lusha M. Tronstad, Steve Jordan, Larry Serpa, Ronald Call, Clint C. Muhlfeld, David W. Weisrock

Time-to-detection occupancy modeling: An efficient method for analyzing the occurrence of amphibians and reptiles Time-to-detection occupancy modeling: An efficient method for analyzing the occurrence of amphibians and reptiles

Occupancy models provide a reliable method of estimating species distributions while accounting for imperfect detectability. The cost of accounting for false absences is that detection and nondetection surveys typically require repeated visits to a site or multiple-observer techniques. More efficient methods of collecting data to estimate detection probabilities would allow additional...
Authors
Brian J. Halstead, Patrick M. Kleeman, Jonathan P. Rose

Development of new information to inform fish passage decisions at the Yale and Merwin hydro projects on the Lewis River, Washington—Final report, 2018 Development of new information to inform fish passage decisions at the Yale and Merwin hydro projects on the Lewis River, Washington—Final report, 2018

The reintroduction of extirpated salmonids to historically occupied areas is becoming increasingly common as a conservation and recovery strategy. Often, reintroductions are implemented after the factors that originally led to species extirpation have been reduced, eliminated, or mitigated. For anadromous Oncorhynchus spp. (Pacific salmon) and O. mykiss (steelhead), addressing barriers...
Authors
Robert K. Al-Chokhachy, Christopher L. Clark, Mark H. Sorel, David A. Beauchamp
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