Publications
This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.
Filter Total Items: 42702
Genetic evidence supports sporadic and independent introductions of subtype H5 low pathogenic avian influenza A viruses from wild birds to domestic poultry in North America Genetic evidence supports sporadic and independent introductions of subtype H5 low pathogenic avian influenza A viruses from wild birds to domestic poultry in North America
Wild bird–origin influenza A viruses (IAVs or avian influenza) have led to sporadic outbreaks among domestic poultry in the United States (US) and Canada, resulting in economic losses through the implementation of costly containment practices and destruction of birds. We used evolutionary analyses of virus sequence data to determine that 78 H5 low pathogenic avian influenza viruses...
Authors
Lei Li, Andrew S. Bowman, Thomas J. DeLiberto, Mary L. Killian, Scott Krauss, Jacqueline M. Nolting, Mia Kim Torchetti, Andrew M. Ramey, Andrew B. Reeves, David E. Stallknecht, Richard J. Webby, Xiu-Feng Wan
Introduction of Eurasian-origin H8N4 influenza A virus into North America via migratory birds Introduction of Eurasian-origin H8N4 influenza A virus into North America via migratory birds
We identified a Eurasian-origin influenza A(H8N4) virus in North America by sampling wild birds in western Alaska, USA. Evidence for repeated introductions of influenza A viruses into North America by migratory birds suggests that intercontinental dispersal might not be exceedingly rare and that our understanding of viral establishment is incomplete.
Authors
Andrew M. Ramey, Andrew B. Reeves, Tyrone F. Donnelly, Rebecca L. Poulson, David E. Stallknecht
Health and disease treatment in captive and reintroduced Whooping Cranes Health and disease treatment in captive and reintroduced Whooping Cranes
The principles and applications of medicine in Whooping Cranes (Grus americana) are similar to that for other crane species, though the necessity of managing Whooping Crane health across the captive, reintroduced, and remnant populations poses particular challenges. In this chapter, we review the important aspects of crane medicine relevant to managing Whooping Cranes in captive and...
Authors
Glenn H. Olsen, Barry Hartup, Sandie Black
Spatially explicit patterns in a dryland's soil respiration and relationships with climate, whole plant photosynthesis and soil fertility Spatially explicit patterns in a dryland's soil respiration and relationships with climate, whole plant photosynthesis and soil fertility
Arid and semiarid ecosystems play a significant role in regulating global carbon cycling, yet our understanding of the controls over the dominant pathways of dryland CO2exchange remains poor. Substantial amounts of dryland soil are not covered by vascular plants and this patchiness in cover has important implications for spatial patterns and controls of carbon cycling. Spatial variation...
Authors
Timothy M. Wertin, Kristina E. Young, Sasha C. Reed
Spatial sampling bias in the Neotoma paleoecological archives affects species paleo-distribution models Spatial sampling bias in the Neotoma paleoecological archives affects species paleo-distribution models
The ability to infer paleo-distributions with limited knowledge of absence makes species distribution modeling (SDM) a useful tool for exploring paleobiogeographic questions. Spatial sampling bias is a known issue when modeling extant species. Here we quantify the spatial sampling bias in a North American packrat midden archive and explore its impact on estimating paleo-distributions. We...
Authors
Richard D. Inman, Janet Franklin, Todd Esque, Kenneth E. Nussear
Habitat overlap between Asiatic black bear Ursus thibetanus and red panda Ailurus fulgens in Himalaya Habitat overlap between Asiatic black bear Ursus thibetanus and red panda Ailurus fulgens in Himalaya
Studying habitat overlap between sympatric species is one of the best ways to identify interspecies relationships and to direct conservation efforts so that multiple species can benefit. However, studies exploring interspecies relationships are very limited in Nepal, making it difficult for the government of Nepal and conservation partners to manage wildlife in their habitats, especially...
Authors
Manjit Bista, Saroj Panthi, Sarah R. Weiskopf
Experimental infection of Tadarida brasiliensis with Pseudogymnoascus destructans, the fungus that causes white-nose syndrome Experimental infection of Tadarida brasiliensis with Pseudogymnoascus destructans, the fungus that causes white-nose syndrome
White-nose syndrome (WNS) is causing significant declines in populations of North American hibernating bats, and recent western and southern expansions of the disease have placed additional species at risk. Understanding differences in species susceptibility and identifying management actions to reduce mortality of bats from WNS are top research priorities. However, the use of wild...
Authors
Michelle Verant, Carol U. Meteyer, Benjamin Stading, David S. Blehert
Indicators of exposure to estrogenic compounds at Great Lakes Areas of Concern: Species and site comparisons Indicators of exposure to estrogenic compounds at Great Lakes Areas of Concern: Species and site comparisons
Adverse effects resulting from potential exposure of wild fishes to estrogenic endocrine disruptors was assessed at seven United States Great Lakes Areas of Concern using biomarkers ranging from organismal (gonadosomatic indices) to tissue/plasma (histology, plasma vitellogenin) and molecular (hepatic gene transcripts) levels. Biomonitoring was conducted on pelagic, top predator species
Authors
Vicki S. Blazer, Heather L. Walsh, Cassidy H. Shaw, Luke R. Iwanowicz, Ryan P. Braham, Patricia Mazik
Genetic analyses reveal cryptic introgression in secretive marsh bird populations Genetic analyses reveal cryptic introgression in secretive marsh bird populations
Hybridization is common in bird populations but can be challenging for management, especially if one of the two parent species is of greater conservation concern than the other. King rails (Rallus elegans) and clapper rails (R. crepitans) are two marsh bird species with similar morphologies, behaviors, and overlapping distributions. The two species are found along a salinity gradient...
Authors
Stephanie S Costner, Amy B. Welsh, Gary R. Costanzo, Sergio R. Harding, James T. Anderson, Susan B. McRae, Todd E. Katzner
What it is to be established: policy and management implications for non-native and invasive species What it is to be established: policy and management implications for non-native and invasive species
Management of invasive species, whether prevention, population reduction, or eradication, requires assessment of the invasive species’ population status and an assessment of the probability of success of management options. Perceptions of a species’ permanence in an environment or lack thereof frequently drives how limited time, financial, and personnel resources are allocated to such...
Authors
Patrick Kocovsky, Rochelle Sturtevant, James Schardt
Evaluating time-removal models for estimating availability of boreal birds during point count surveys: Sample size requirements and model complexity Evaluating time-removal models for estimating availability of boreal birds during point count surveys: Sample size requirements and model complexity
We used conventional and finite mixture removal models with and without time-varying covariates to evaluate availability given presence for 152 bird species using data from point counts in boreal North America. We found that the choice of model had an impact on the estimability of unknown model parameters and affected the bias and variance of corrected counts. Finite mixture models...
Authors
Peter Solymos, Steven M. Matsuoka, Steven G. Cumming, Diana Stralberg, Patricia C. Fontaine, Fiona K. A. Schmiegelow, Samantha J. Song, Erin M. Bayne
Monitoring responses to variation in food supply for a migratory waterfowl: American Black Duck (Anas rubripes) in winter Monitoring responses to variation in food supply for a migratory waterfowl: American Black Duck (Anas rubripes) in winter
Wintering Black Ducks (Anas rubripes) concentrate in wetlands along the Atlantic coast where natural and anthropogenic disturbances have increased over the last 50 years, a period in which the population of Black Ducks has declined. We studied the sensitivity of Black Ducks to perturbations in food supply that often result from disturbances by storms, predators, and people. In the paper...
Authors
Perry S. Barboza, Dennis G. Jorde