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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42768

Outmigration behavior and survival of juvenile Chinook salmon (Oncorhynchus tshawytscha) in response to deep drawdown of the Lookout Point Project, Middle Fork Willamette River, Oregon Outmigration behavior and survival of juvenile Chinook salmon (Oncorhynchus tshawytscha) in response to deep drawdown of the Lookout Point Project, Middle Fork Willamette River, Oregon

An acoustic telemetry study was conducted during August 2023–February 2024 to evaluate outmigration behavior and survival of juvenile Chinook salmon (Oncorhynchus tshawytscha) in the Middle Fork Willamette River, Oregon, during an experimental operation that was designed to facilitate downstream passage through two reservoirs and two dams. The experimental operation consisted of lowering...
Authors
Dalton J. Hance, Tobias J. Kock, Jake R. Kelley, Amy C. Hansen, Russell W. Perry, Scott D Fielding

Distribution, abundance, breeding activities, and habitat use of the Least Bell's Vireo at Marine Corps Base Camp Pendleton, California—2023 annual report Distribution, abundance, breeding activities, and habitat use of the Least Bell's Vireo at Marine Corps Base Camp Pendleton, California—2023 annual report

Executive Summary The purpose of this report is to provide the Marine Corps with an annual summary of abundance, breeding activity, demography, and habitat use of endangered Least Bell’s Vireos (Vireo bellii pusillus) at Marine Corps Base Camp Pendleton, California (MCBCP or Base). Surveys for the Least Bell's Vireo were completed at MCBCP between April 11 and July 20, 2023. Core survey...
Authors
Suellen Lynn, Barbara E. Kus

Evaluation of the gap intercept method to measure rangeland connectivity Evaluation of the gap intercept method to measure rangeland connectivity

Characterizing the connectivity of materials, organisms, and energy on rangelands is critical to understanding and managing ecosystem response to disturbances. For over twenty years, scientists and rangeland managers have used the gap intercept method to monitor connectivity. However, using gap intercept measurements to infer ecosystem processes or inform management actions and...
Authors
Sarah E. McCord, Joseph R. Brehm, Lea A. Condon, Leah Dreesmann, Lisa M. Ellsworth, Matthew J. Germino, Jeffrey E. Herrick, Brian K. Howard, Emily Kachergis, Jason W. Karl, Anna C. Knight, Savannah Meadors, Aleta Nafus, Beth A. Newingham, Peter J. Olsoy, Nicole Pietrasiak, David S. Pilliod, Anthony Schaefer, Nicholas P. Webb, Brandi E. Wheeler, C. Jason Williams, Kristina E. Young

U.S. Geological Survey research and assessments supporting carbon dioxide removal U.S. Geological Survey research and assessments supporting carbon dioxide removal

Both carbon capture and storage (CCS) and carbon dioxide removal (CDR) are methods to limit future global temperature rise and ocean acidification. CCS sequesters (stores) carbon dioxide (CO2) captured from industrial sources thereby preventing the CO2 from reaching the atmosphere. The captured CO2 is injected into underground geologic reservoirs or is converted into stable industrial...
Authors
Peter D. Warwick, Madalyn S. Blondes, Judith Z. Drexler, Kevin D. Kroeger, Zhiliang Zhu

New technology for an ancient fish: A lamprey life cycle modeling tool with an R Shiny application New technology for an ancient fish: A lamprey life cycle modeling tool with an R Shiny application

Lampreys (Petromyzontiformes) are an ancient group of fishes with complex life histories. We created a life cycle model that includes an R Shiny interactive web application interface to simulate abundance by life stage. This will allow scientists and managers to connect available demographic information in a framework that can be applied to questions regarding lamprey biology and...
Authors
Dylan Gerald-Everett Gomes, Joseph R. Benjamin, Benjamin J. Clemens, Ralph Lampman, Jason B. Dunham

Predicted occurrence and abundance habitat suitability of invasive plants in the contiguous United States: Updates for the INHABIT web tool. Predicted occurrence and abundance habitat suitability of invasive plants in the contiguous United States: Updates for the INHABIT web tool.

Invasive plant species have substantial negative ecological and economic impacts. Geographic information on the potential and actual distributions of invasive plants is critical for their effective management. For many regions, numerous sources of predictive geographic information exist for invasive plants, often in the form of outputs from species distribution models (SDMs). The...
Authors
Catherine S. Jarnevich, Peder Engelstad, Demetra A. Williams, Keana S. Shadwell, Cameron J. Reimer, Grace Henderson, Janet S. Prevey, Ian S. Pearse

A hierarchical model for eDNA fate and transport dynamics accommodating low concentration samples A hierarchical model for eDNA fate and transport dynamics accommodating low concentration samples

Environmental DNA (eDNA) sampling is an increasingly important tool for answering ecological questions and informing aquatic species management; however, several factors currently limit the reliability of ecological inference from eDNA sampling. Two particular challenges are (1) determining species source location(s) and (2) accurately and precisely measuring low concentration eDNA...
Authors
Ben Augustine, Patrick Ross Hutchins, Devin Nicole Jones-Slobodian, Jacob R. Williams, Eric Leinonen, Adam Sepulveda

The cost of self-defense: Browsing effects in the rare plant species Salix arizonica The cost of self-defense: Browsing effects in the rare plant species Salix arizonica

Coevolution between plants and their animal predators has led to diverse defensive adaptations. Multiple theories of defense propose that there are resource allocation costs associated with producing chemical defenses. One leading hypothesis, optimal defense theory (ODT), suggests that natural selection will result in the allocation of resources to defenses that optimize the cost-to...
Authors
Shannon J. Lencioni, Robert Massatti, Ken Keefover-Ring, Liza M. Holeski

Declining ecological resilience and invasion resistance under climate change in the sagebrush region, United States Declining ecological resilience and invasion resistance under climate change in the sagebrush region, United States

In water-limited dryland ecosystems of the Western United States, climate change is intensifying the impacts of heat, drought, and wildfire. Disturbances often lead to increased abundance of invasive species, in part, because dryland restoration and rehabilitation are inhibited by limited moisture and infrequent plant recruitment events. Information on ecological resilience to...
Authors
Daniel Rodolphe Schlaepfer, Jeanne C. Chambers, Alexandra K. Urza, Brice B. Hanberry, Jessi L. Brown, David I. Board, Steven B. Campbell, Karen J. Clause, Michele R. Crist, John B. Bradford

Structurally selective ozonolysis of p-phenylenediamines and toxicity in coho salmon and rainbow trout Structurally selective ozonolysis of p-phenylenediamines and toxicity in coho salmon and rainbow trout

The tire-rubber-derived ozonation product of N-(1,3-dimethylbutyl)-N′-phenyl-p-phenylenediamine (6PPD), N-(1,3-dimethylbutyl)-N′-phenyl-p-phenylenediamine-quinone (6PPD-Q), was recently discovered to cause acute mortality in coho salmon (Oncorhynchus kisutch). para-Phenylenediamines (PPDs) with variable side chains distinct from 6PPD have been identified as potential replacement...
Authors
Linna Xie, Jie Yu, Pranav Nair, Jianxian Sun, Holly Barrett, Oliver Meek, Xing Qian, Diwen Yang, Lisa V. Kennedy, Derek Kozakiewicz, Chunyan Hao, John D. Hansen, Justin Blaine Greer, Jonathan P.D. Abbatt, Hui Peng

Modeling the responses of blue carbon fluxes in Mississippi River Deltaic Plain brackish marshes to climate change induced hydrologic conditions Modeling the responses of blue carbon fluxes in Mississippi River Deltaic Plain brackish marshes to climate change induced hydrologic conditions

Carbon fluxes in tidal brackish marshes play a critical role in determining coastal wetland carbon sequestration and storage, thus affecting carbon crediting of coastal wetland restoration. In this study, a process-driven wetland biogeochemistry model, Wetland Carbon Assessment Tool DeNitrification-DeComposition was applied to nine brackish marsh sites in Mississippi River (MR) Deltaic...
Authors
Hongqing Wang, Ken Krauss, Zhaohua Dai, Gregory E. Noe, Carl C. Trettin

Effects of trap funnel and finger design on Sea Lamprey entrance and retention Effects of trap funnel and finger design on Sea Lamprey entrance and retention

Traps are used to catch adult sea lampreys during their upstream migration to estimate their abundance in streams and, in turn, provide a measure of the Sea Lamprey Control Program’s effectiveness. During 2015 and 2016, we experimentally compared two components of sea lamprey trap design: trap entrance funnel type and the presence of retention devices, using side-by-side instream test...
Authors
Peter J. Hrodey, Gale Bravener, Scott M. Miehls
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