Skip to main content
U.S. flag

An official website of the United States government

Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42702

Prevalence of Batrachochytrium dendrobatidis and B. salamandrivorans in the Gulf Coast Waterdog, Necturus beyeri, from Southeast Louisiana, USA Prevalence of Batrachochytrium dendrobatidis and B. salamandrivorans in the Gulf Coast Waterdog, Necturus beyeri, from Southeast Louisiana, USA

The globally widespread amphibian fungal pathogen Batrachochytrium dendrobatidis (Bd) has been linked to amphibian declines worldwide (Lips et al. 2006; Skerratt et al. 2007). In Louisiana, USA, Bd has been found in several amphibian species (Chatfield et al. 2012; Rothermel et al. 2008), but to our knowledge no population-level die-offs have been observed. Published literature on Bd...
Authors
Brad M. Glorioso, J. Hardin Waddle, Corinne L. Richards-Zawacki

RNA sequencing analysis of transcriptional change in the freshwater mussel Elliptio complanata after environmentally relevant sodium chloride exposure RNA sequencing analysis of transcriptional change in the freshwater mussel Elliptio complanata after environmentally relevant sodium chloride exposure

To identify potential biomarkers of salt stress in a freshwater sentinel species, we examined transcriptional responses of the common mussel Elliptio complanata to controlled sodium chloride (NaCl) exposures. Ribonucleic acid sequencing (RNA-Seq) of mantle tissue identified 481 transcripts differentially expressed in adult mussels exposed to 2 ppt NaCl (1.2 ppt chloride) for 7 d, of...
Authors
Laura S. Robertson, Heather S. Galbraith, Deborah D. Iwanowicz, Carrie J. Blakeslee, Robert S. Cornman

Can we save large carnivores without losing large carnivore science? Can we save large carnivores without losing large carnivore science?

Large carnivores are depicted to shape entire ecosystems through top-down processes. Studies describing these processes are often used to support interventionist wildlife management practices, including carnivore reintroduction or lethal control programs. Unfortunately, there is an increasing tendency to ignore, disregard or devalue fundamental principles of the scientific method when
Authors
Benjamin L. Allen, Lee R. Allen, Henrik Andren, Guy Ballard, Luigi Boitani, Richard M. Engeman, Peter J.S. Fleming, Peter M. Haswell, Adam T. Ford, Rafal Kowalczyk, L. David Mech, John Linnell, Daniel M. Parker

Structured decision making for conservation of bull trout (Salvelinus confluentus) in Long Creek, Klamath River Basin, south-central Oregon Structured decision making for conservation of bull trout (Salvelinus confluentus) in Long Creek, Klamath River Basin, south-central Oregon

With the decline of bull trout (Salvelinus confluentus), managers face multiple, and sometimes contradictory, management alternatives for species recovery. Moreover, effective decision-making involves all stakeholders influenced by the decisions (such as Tribal, State, Federal, private, and non-governmental organizations) because they represent diverse objectives, jurisdictions, policy...
Authors
Joseph R. Benjamin, Kevin McDonnell, Jason B. Dunham, William R. Brignon, James Peterson

Movements of four native Hawaiian birds across a naturally fragmented landscape Movements of four native Hawaiian birds across a naturally fragmented landscape

Animals often increase their fitness by moving across space in response to temporal variation in habitat quality and resource availability, and as a result of intra and inter-specific interactions. The long-term persistence of populations and even whole species depends on the collective patterns of individual movements, yet animal movements have been poorly studied at the landscape level...
Authors
Jessie L. Knowlton, David J. Flaspohler, Eben H. Paxton, Tadashi Fukami, Christian P. Giardina, Daniel S. Gruner, Erin E. Wilson Rankin

Global hotspots and correlates of alien species richness across taxonomic groups Global hotspots and correlates of alien species richness across taxonomic groups

Human-mediated transport beyond biogeographic barriers has led to the introduction and establishment of alien species in new regions worldwide. However, we lack a global picture of established alien species richness for multiple taxonomic groups. Here, we assess global patterns and potential drivers of established alien species richness across eight taxonomic groups (amphibians, ants...
Authors
Wayne Dawson, Dietmar Moser, Mark van Kleunen, Holger Kreft, Jan Pergl, Petr Pysek, Patrick Weigelt, Marten Winter, Bernd Lenzner, Tim M. Blackburn, Ellie Dyer, Phillip Cassey, Sally-Louise Scrivens, Evan P. Economo, Benoit Guenard, Cesar Capinha, Hanno Seebens, Pablo Garcia-Diaz, Wolfgang Nentwig, Emili Garcia-Berthou, Christine Casal, Nicholas E. Mandrak, Pam Fuller, Carsten Meyer, Franz Essl

Comparison of size, terminal fall velocity, and density of bighead carp, silver carp, and grass carp eggs for use in drift modeling Comparison of size, terminal fall velocity, and density of bighead carp, silver carp, and grass carp eggs for use in drift modeling

Invasive Asian carp established in the United States spawn in the turbulent water of rivers, and their eggs and early larvae develop while drifting in the current. The eggs, which are believed to perish if they settle before hatching, are slightly denser than water and are held in suspension by water turbulence. It is possible to use egg drift modeling to assess the capability of a river...
Authors
Amy E. George, Tatiana Garcia, Duane Chapman

The deep chlorophyll layer in Lake Ontario: Extent, mechanisms of formation, and abiotic predictors The deep chlorophyll layer in Lake Ontario: Extent, mechanisms of formation, and abiotic predictors

Epilimnetic production has declined in Lake Ontario, but increased production in metalimnetic deep chlorophyll layers (DCLs) may compensate for these losses. We investigated the spatial and temporal extent of DCLs, the mechanisms driving DCL formation, and the use of physical variables for predicting the depth and concentration of the deep chlorophyll maximum (DCM) during April–September...
Authors
Anne E. Scofield, James M. Watkins, Brian Weidel, Frederick J. Luckey, Lars G. Rudstam

Spatial and temporal variability in the effects of wildfire and drought on thermal habitat for a desert trout Spatial and temporal variability in the effects of wildfire and drought on thermal habitat for a desert trout

We studied how drought and an associated stressor, wildfire, influenced stream flow permanence and thermal regimes in a Great Basin stream network. We quantified these responses by collecting information with a spatially extensive network of data loggers. To understand the effects of wildfire specifically, we used data from 4 additional sites that were installed prior to a 2012 fire that...
Authors
Luke Schultz, Michael Heck, David Hockman-Wert, T Allai, Seth J. Wenger, Cook, Jason B. Dunham

Biological soil crusts: Diminutive communities of potential global importance Biological soil crusts: Diminutive communities of potential global importance

Biological soil crusts (biocrusts) are widespread, diverse communities of cyanobacteria, fungi, lichens, and mosses living on soil surfaces, primarily in drylands. Biocrusts can locally govern primary production, soil fertility, hydrology, and surface energy balance, with considerable variation in these functions across alternate community states. Further, these communities have been...
Authors
Scott Ferrenberg, Colin Tucker, Sasha C. Reed

Large carnivore science: non-experimental studies are useful, but experiments are better Large carnivore science: non-experimental studies are useful, but experiments are better

We recently described the following six interrelated issues that justify questioning some of the discourse about the reliability of the literature on the ecological roles of large carnivores (Allen et al. In press): 1. The overall paucity of available data, 2. The reliability of carnivore population sampling techniques, 3. The general disregard for alternative hypotheses to top-down...
Authors
Benjamin L. Allen, Lee R. Allen, Henrik Andren, Guy Ballard, Luigi Boitani, Richard M. Engeman, Peter J. S. Fleming, Adam T. Ford, Peter M. Haswell, Rafal Kowalczyk, John D. C. Linnell, L. David Mech, Daniel M. Parker

Shifting brucellosis risk in livestock coincides with spreading seroprevalence in elk Shifting brucellosis risk in livestock coincides with spreading seroprevalence in elk

Tracking and preventing the spillover of disease from wildlife to livestock can be difficult when rare outbreaks occur across large landscapes. In these cases, broad scale ecological studies could help identify risk factors and patterns of risk to inform management and reduce incidence of disease. Between 2002 and 2014, 21 livestock herds in the Greater Yellowstone Area (GYA) were...
Authors
Angela Brennan, Paul C. Cross, Katie Portacci, Brandon M. Scurlock, William H. Edwards
Was this page helpful?