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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42768

Improving how science informs policy within the Ecosystem Approach Improving how science informs policy within the Ecosystem Approach

Science is fundamental to sound policies, particularly when it comes to implementing an Ecosystem Approach. Science can and should inform nearly all facets of an Ecosystem Approach, yet challenges remain to realizing this goal. To help identify and better understand these challenges we used a qualitative comparative case study approach to identify and characterize the challenges and...
Authors
Kathleen Williams, Scott P. Sowa, Matthew Child, Marc Gaden, Janette Anderson, David B. Bunnell, Paul Drca, Roger L. Knight, Richard Norton, Rachael Taylor

Fishes move to transient local refuges, not persistent landscape refuges during river drying experiment Fishes move to transient local refuges, not persistent landscape refuges during river drying experiment

Anthropogenically driven flow intermittency is increasing in freshwater streams, with important implications for the management and conservation of aquatic ecosystems. Because most freshwater fishes are mobile, they are expected to emigrate from intermittent reaches, but this may not be true in streams transitioning from perennial to intermittent. Here, we attempt to determine if...
Authors
Thomas P Archdeacon, Eric J. Gonzales, Charles Yackulic

Serologic survey of selected arthropod-borne pathogens in free-ranging snowshoe hares (Lepus americanus) captured in Northern Michigan, USA Serologic survey of selected arthropod-borne pathogens in free-ranging snowshoe hares (Lepus americanus) captured in Northern Michigan, USA

Snowshoe hares (Lepus americanus) in the Upper Peninsula (UP) of Michigan, USA, occupy the southern periphery of the species' range and are vulnerable to climate change. In the eastern UP, hares are isolated by the Great Lakes, potentially exacerbating exposure to climate-change-induced habitat alterations. Climate change is also measurably affecting distribution and prevalence of vector...
Authors
Erik K. Hofmeister, Eric Clark, Melissa Lund, Daniel A. Grear

Estimating migration timing and abundance in partial migratory systems by integrating continuous antenna detections with physical captures Estimating migration timing and abundance in partial migratory systems by integrating continuous antenna detections with physical captures

Many populations migrate between two different habitats (e.g. wintering/foraging to breeding area, mainstem–tributary, river–lake, river–ocean, river–side channel) as part of their life history. Detection technologies, such as passive integrated transponder (PIT) antennas or sonic receivers, can be placed at boundaries between habitats (e.g. near the confluence of rivers) to detect...
Authors
Maria C. Dzul, William L. Kendall, Charles Yackulic, D.R. Van Haverbeke, P. Mackinnon, K. Young, M. Pillow, Joseph E Thomas

Cross-scale analysis reveals interacting predictors of annual and perennial cover in Northern Great Basin rangelands Cross-scale analysis reveals interacting predictors of annual and perennial cover in Northern Great Basin rangelands

Exotic annual grass invasion is a widespread threat to the integrity of sagebrush ecosystems in Western North America. Although many predictors of annual grass prevalence and native perennial vegetation have been identified, there remains substantial uncertainty about how regional-scale and local-scale predictors interact to determine vegetation heterogeneity, and how associations...
Authors
Madelon Florence Case, Kirk W. Davies, Chad S. Boyd, Lina Aoyama, Joanna Merson, Calvin Penkauskas, Lauren M. Hallett

Modeling the potential spread of the non-native regal demoiselle, Neopomacentrus cyanomos, in the western Atlantic Modeling the potential spread of the non-native regal demoiselle, Neopomacentrus cyanomos, in the western Atlantic

Predicting the potential distribution of a non-native species can assist management efforts to mitigate impacts on recipient ecosystems. However, such predictions are lacking for marine species, such as the non-native regal demoiselle, Neopomacentrus cyanomos, that is currently expanding its distribution in the western Atlantic. We used correlative species distribution models with three...
Authors
Melanie M Esch, Catherine S. Jarnevich, Nuno Simoes, Timothy R McClanahan, Alastair R Harborne

Status and trends of pelagic and benthic prey fish populations in Lake Michigan, 2023 Status and trends of pelagic and benthic prey fish populations in Lake Michigan, 2023

Fall bottom trawl (fall BT) and lakewide acoustic (AC) surveys are conducted annually to generate indices of pelagic and benthic prey fish densities in Lake Michigan. The fall BT survey has been conducted each fall since 1973 using 12-m trawls at depths ranging from 9 to 110 m at fixed locations distributed across seven transects; this survey estimates densities of seven prey fish...
Authors
David Warner, Ralph W. Tingley, Charles P. Madenjian, Cory Brant, Steve A. Farha, Patricia Dieter, Benjamin A. Turschak, Dale Hanson, Kristy Phillips, Caleb Geister

The roles of diet and habitat use in pesticide bioaccumulation by juvenile Chinook Salmon: Insights from stable isotopes and fatty acid biomarkers The roles of diet and habitat use in pesticide bioaccumulation by juvenile Chinook Salmon: Insights from stable isotopes and fatty acid biomarkers

Stable isotopes (SI) and fatty acid (FA) biomarkers can provide insights regarding trophic pathways and habitats associated with contaminant bioaccumulation. We assessed relationships between SI and FA biomarkers and published data on concentrations of two pesticides [dichlorodiphenyltrichloroethane and degradation products (DDX) and bifenthrin] in juvenile Chinook Salmon (Oncorhynchus...
Authors
Sara E. Anzalone, Neil W. Fuller, Kara E. Huff Hartz, Gregory W. Whitledge, Jason Tyler Magnuson, Daniel Schlenk, Shawn Acuña, Matt R. Whiles, Michael J. Lydy

Genetic Connectivity in the Arizona toad (Anaxyrus microscaphus): implications for conservation of a stream dwelling amphibian in the arid Southwestern U.S. Genetic Connectivity in the Arizona toad (Anaxyrus microscaphus): implications for conservation of a stream dwelling amphibian in the arid Southwestern U.S.

The Arizona Toad (Anaxyrus microscaphus) is restricted to riverine corridors and adjacent uplands in the arid southwestern United States. As with numerous amphibians worldwide, populations are declining and face various known or suspected threats, from disease to habitat modification resulting from climate change. The Arizona Toad has been petitioned to be listed under the U.S...
Authors
Sara J. Oyler-McCance, Mason J. Ryan, Brian K. Sullivan, Jennifer A. Fike, Robert S. Cornman, J. T. Giermakowski, Shawna J Zimmerman, R. L. Harrow, S.J. Hedwell, Blake R. Hossack, I. M. Latella, R. E. Lovish, S. Siefken, Brent H. Sigafus, Erin L. Muths

How diverse is the toolbox? A review of management actions to conserve or restore coregonines How diverse is the toolbox? A review of management actions to conserve or restore coregonines

Over the past centuries, coregonines have been exposed to a range of stressors that have led to extinctions, extirpations, and speciation reversals. Given that some populations remain at risk and fishery managers have begun restoring coregonines where they have been extirpated, we reviewed the primary and gray literature to describe the diversity of coregonine restoration or conservation...
Authors
David Bunnell, Orlane Anneville, Jan Baer, Colin Bean, Kimmo Kahlilainen, Alfred Sandstrom, Oliver Selz, Pascal Vonlanthen, Josef Wanzenbock, Brian Weidel

Evaluation of data collected by Guam Division of Aquatic and Wildlife Resources during population establishment and monitoring of ko'ko' (Hypotaenidia owstoni) on Rota, Commonwealth of the Northern Mariana Islands, and wildlife monitoring datasets on Coco Evaluation of data collected by Guam Division of Aquatic and Wildlife Resources during population establishment and monitoring of ko'ko' (Hypotaenidia owstoni) on Rota, Commonwealth of the Northern Mariana Islands, and wildlife monitoring datasets on Coco

Efforts to recover the critically endangered ko’ko’ (Guam rail, Hypotaenidia owstoni) through establishing an experimental population on the island of Rota in the Commonwealth of the Northern Mariana Islands have been ongoing for three decades. The U.S. Geological Survey collaborated with the Guam Division of Aquatic and Wildlife Resources and the Government of Guam to evaluate whether...
Authors
Richard J. Camp, Sarah A B Nash, Kristina L. Paxton

Metagenomic sequencing sheds light on microbes putatively associated with pneumonia-related fatalities of white-tailed deer (Odocoileus virginianus) Metagenomic sequencing sheds light on microbes putatively associated with pneumonia-related fatalities of white-tailed deer (Odocoileus virginianus)

With emerging infectious disease outbreaks in human, domestic and wild animal populations on the rise, improvements in pathogen characterization and surveillance are paramount for the protection of human and animal health, as well as the conservation of ecologically and economically important wildlife. Genomics offers a range of suitable tools to meet these goals, with metagenomic...
Authors
Melanie B. Prentice, Marie L.J. Gilbertson, Daniel J. Storm, Allison H. Roy, Daniel P. Walsh, Marie E. Pinkerton, Pauline L. Kamath
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