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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42707

Avian botulism case definition for wildlife Avian botulism case definition for wildlife

Diagnostic laboratories receive carcasses and samples for diagnostic evaluation and pathogen/toxin detection. Case definitions bring clarity and consistency to the evaluation process. Their use within and between organizations allows more uniform reporting of diseases and etiologic agents. The intent of a case definition is to provide scientifically based criteria for determining (a) if...
Authors
Julia S. Lankton, Brian Stevens

[Disease/condition] case definition [template] for wildlife [Disease/condition] case definition [template] for wildlife

Diagnostic laboratories receive carcasses and samples for diagnostic evaluation and pathogen/toxin detection. Case definitions bring clarity and consistency to the evaluation process. Their use within and between organizations allows more uniform reporting of diseases and etiologic agents. The intent of a case definition is to provide scientifically based criteria for determining (a) if...
Authors
Kimberli J.G. Miller, E. Jane Parmley, Anne Ballmann, Jennifer Buckner, Megan Jones, Julia S. Lankton, Marnie Zimmer, Emily Lankau

Case definitions for wildlife diseases Case definitions for wildlife diseases

Welcome to the first manual of “Case Definitions for Wildlife Diseases,” a “living” electronic publication. The plan is to add and update this manual’s case definitions periodically as warranted; thus, this manual will never be completed, and readers should download the latest versions of specific chapters (that is, definitions) when available. Constructive suggestions from readers are...
Authors
Kimberli J.G. Miller, E. Jane Parmley, Anne Ballmann, Jennifer Buckner, Megan Jones, Julia S. Lankton, Marnie Zimmer

Yosemite toad (Anaxyrus canorus) transcriptome reveals interplay between speciation genes and adaptive introgression Yosemite toad (Anaxyrus canorus) transcriptome reveals interplay between speciation genes and adaptive introgression

Genomes are heterogeneous during the early stages of speciation, with small ‘islands’ of DNA appearing to reflect strong adaptive differences, surrounded by vast seas of relative homogeneity. As species diverge, secondary contact zones between them can act as an interface and selectively filter through advantageous alleles of hybrid origin. Such introgression is another important...
Authors
Paul A. Maier, Amy G. Vandergast, Andrew J. Bohonak

Annotated bibliography of scientific research relevant to oil and gas reclamation best management practices in the western United States, published from 1969 through 2020 Annotated bibliography of scientific research relevant to oil and gas reclamation best management practices in the western United States, published from 1969 through 2020

Integrating recent scientific knowledge into management decisions supports effective natural resource management and can lead to better resource outcomes. However, finding and accessing scientific knowledge can be time consuming and costly. To assist in this process, the U.S. Geological Survey has created a series of annotated bibliographies on topics of management concern for lands in...
Authors
Rebecca K. Mann, Molly L. McCormick, Seth M. Munson, Hillary F. Cooper, Lee C. Bryant, Jared K. Swenson, Laura A. Johnston, Savannah L. Wilson, Michael C. Duniway

Climatic variability as a principal driver of primary production in the southernmost subalpine Rocky Mountain lake Climatic variability as a principal driver of primary production in the southernmost subalpine Rocky Mountain lake

Mountain lakes are sensitive indicators of anthropogenically driven global change, with lake sediment records documenting increased primary production during the twentieth century. Atmospheric nutrient deposition and warming have been attributed to changes in other Western mountain lakes, however, the intensity of these drivers varies. We analyzed a sediment core representing a 270-year...
Authors
Anna Shampain, Jill Baron, Peter R. Leavitt, Sarah Spaulding

Estimating multivariate ecological variables at high spatial resolution using a cost-effective matching algorithm Estimating multivariate ecological variables at high spatial resolution using a cost-effective matching algorithm

Simulation models are valuable tools for estimating ecosystem response to environmental conditions and are particularly relevant for investigating climate change impacts. However, because of high computational requirements, models are often applied over a coarse grid of points or for representative locations. Spatial interpolation of model output can be necessary to guide decision-making...
Authors
Rachel R. Renne, Daniel Rodolphe Schlaepfer, Kyle A. Palmquist, William K. Lauenroth, John B. Bradford

Growth, survival, and cohort formation of juvenile Lost River (Deltistes luxatus) and shortnose suckers (Chasmistes brevirostris) in Upper Klamath Lake, Oregon, and Clear Lake Reservoir, California—2021–22 monitoring report Growth, survival, and cohort formation of juvenile Lost River (Deltistes luxatus) and shortnose suckers (Chasmistes brevirostris) in Upper Klamath Lake, Oregon, and Clear Lake Reservoir, California—2021–22 monitoring report

Executive Summary The work reported in this publication provides updated data and interpretation for sampling years 2015 and 2022 of the juvenile monitoring project. The study objectives, background, study area, species description, and methods remained the same or similar throughout the years, while the executive summary, results, and discussion were updated each year. Therefore much of...
Authors
Barbara A. Martin, John M. Caldwell, Jacob R. Krause, Alta C. Harris

Climate-induced tree-mortality pulses are obscured by broad-scale and long-term greening Climate-induced tree-mortality pulses are obscured by broad-scale and long-term greening

Vegetation greening has been suggested to be a dominant trend over recent decades, but severe pulses of tree mortality in forests after droughts and heatwaves have also been extensively reported. These observations raise the question of to what extent the observed severe pulses of tree mortality induced by climate could affect overall vegetation greenness across spatial grains and...
Authors
Yuchao Yan, Shilong Piao, William M. Hammond, Anping Chen, Songbai Hong, Xu Hao, Seth M. Munson, Ranga B. Myneni, Craig D. Allen

Too simple, too complex, or just right? Advantages, challenges, and guidance for indicators of genetic diversity Too simple, too complex, or just right? Advantages, challenges, and guidance for indicators of genetic diversity

Measuring genetic diversity of wild species using DNA-based data remains resource intensive and time consuming for nearly all species. However, genetic assessments are needed for global conservation commitments, including the Convention on Biological Diversity, and for governments and managers to evaluate conservation progress, as well as prioritizing species and populations to preserve...
Authors
Sean M. Hoban, Jessica M. da Silva, Alice C. Hughes, Margaret Hunter, Belma Kalamujic Stroil, Linda Laikre, Alicia Mastretta-Yanes, Katie L Millette, Ivan Paz-Vinas, Lucia Ruiz Bustos, Robyn E. Shaw, Cristiano Vernesi, the Coalition for Conservation Genetics

The decision maker’s lament: If I only had some science! The decision maker’s lament: If I only had some science!

Environmental decision makers lament instances in which the lack of actionable science limits confident decision-making. Their reaction when the needed scientific information is of poor quality, uninformative, unintelligible, or altogether absent is often to criticize scientists, their work, or science in general. The considerations offered here encourage decision makers to explore...
Authors
Gustavo A. Bisbal

Summary of data collected during field efficacy trials of florfenicol and oxytetracycline dihydrate in controlling mortality in walleye (Sander vitreus) because of motile Aeromonad infections Summary of data collected during field efficacy trials of florfenicol and oxytetracycline dihydrate in controlling mortality in walleye (Sander vitreus) because of motile Aeromonad infections

Motile Aeromonad septicemia is a substantial concern during fish propagation and can be catastrophic for fish hatcheries. We tested the efficacy of two different drugs (florfenicol and oxytetracycline) offered with feed as possible treatment options to control mortality because of motile Aeromonad infection. We offered top-coated medicated feeds to hatchery-reared Sander vitreus (walleye...
Authors
Christopher M. Merkes, Maren T. Tuttle-Lau, Susan M. Schleis, Aaron R. Cupp
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