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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42765

Appendix 1: Lake Powell water quality monitoring Appendix 1: Lake Powell water quality monitoring

No abstract available.
Authors
Bridget Deemer, Nicholas Voichick, Thomas A. Sabol, Caitlin M. Andrews, Bryce Anthony Mihalevich

Joint spatiotemporal models to predict seabird densities at sea Joint spatiotemporal models to predict seabird densities at sea

Introduction: Seabirds are abundant, conspicuous members of marine ecosystems worldwide. Synthesis of distribution data compiled over time is required to address regional management issues and understand ecosystem change. Major challenges when estimating seabird densities at sea arise from variability in dispersion of the birds, sampling effort over time and space, and differences in...
Authors
Mayumi L. Arimitsu, John F. Piatt, James Thorson, Kathy Kuletz, Gary Drew, Sarah K. Schoen, Dan Cushing, Caitlin Kroeger, William Sydeman

Chapter 5: Health and diseases Chapter 5: Health and diseases

Health and diseases are integral parts of the life of seabirds that merit attention if we expect to truly understand, protect, and conserve them. Diseases such as avian influenza, avian pox, pasteurellosis, and paralytic shellfish poisoning have a proven history of decreasing the survival or breeding success of seabirds. However, each host-pathogen-environment system is unique, and our...
Authors
Ralph Vanstreels, Marcella Uhart, Thierry M. Work

Livestock removal increases plant cover across a heterogeneous dryland landscape on the Colorado Plateau Livestock removal increases plant cover across a heterogeneous dryland landscape on the Colorado Plateau

Livestock removal is increasingly used as a management option to mitigate the negative impacts of grazing-related disturbances on rangelands. Removal generally increases plant cover, but it is unclear when, where, and by how much plant and soil cover changes can be expected. On the Colorado Plateau, complex geology, topography, soils, and climate all interact to mediate the relationship...
Authors
Brandon E McNellis, Anna C. Knight, Travis W. Nauman, Samuel Norton Chambers, C.W. Brungard, S.E. Fick, C.G. Livensperger, C.G. Borthwick, Michael C. Duniway

Lessons learned in knowledge co-production for climate-smart decision-making Lessons learned in knowledge co-production for climate-smart decision-making

Knowledge co-production, a process that involves both creators and users of information in knowledge generation, is growing in popularity in the conservation and ecology fields. While examples of successful co-production are becoming more common, many barriers and challenges remain in this work. Here, we reflect on our experiences in knowledge co-production from three recent case studies...
Authors
Alyssa Rosemartin, Theresa Crimmins, Katherine L. Gerst, Erin E. Posthumus, Aaron R. Ramirez, Cynthia S. Wallace, Toni Lyn Morelli

Estimating parasite infrapopulation size given imperfect detection: Proof-of-concept with ectoparasitic fleas on prairie dogs Estimating parasite infrapopulation size given imperfect detection: Proof-of-concept with ectoparasitic fleas on prairie dogs

Parasite infrapopulation size - the population of parasites affecting a single host - is a central metric in parasitology. However, parasites are small and elusive such that imperfect detection is expected. Repeated sampling of parasites during primary sampling occasions (e.g., each host capture) informs the detection process. Here, we estimate flea (Siphonaptera) infrapopulation size on...
Authors
David A. Eads, Kathryn P. Huyvaert, Dean E. Biggins

Landscape and connectivity metrics as a spatial tool to support invasive annual grass management decisions Landscape and connectivity metrics as a spatial tool to support invasive annual grass management decisions

The spatial patterns and context of invasions are increasingly recognized as important for successful and efficient management actions. Beyond mapping occurrence or percent cover in pixels, spatial summary information that describes the size and arrangement of patches in the context of a larger landscape (e.g., infested regions, connected patch networks) can add a depth of information...
Authors
Erin K. Buchholtz, Julie A. Heinrichs, Michele R. Crist

Assessment of habitat use by juvenile Chinook salmon (Oncorhynchus tshawytscha) in the Willamette River Basin, 2020–21 Assessment of habitat use by juvenile Chinook salmon (Oncorhynchus tshawytscha) in the Willamette River Basin, 2020–21

We conducted a field study during 2020–21 to describe habitat use patterns of juvenile Chinook salmon (Oncorhynchus tshawytscha) in the mainstem Willamette, McKenzie, and Santiam Rivers and to evaluate how habitat suitability criteria affected the predictive accuracy of a hydraulic habitat model. Two approaches were used to collect habitat use data: a stratified sampling design was used...
Authors
Gabriel S. Hansen, Russell W. Perry, Tobias J. Kock, James S. White, Philip V. Haner, John M. Plumb, J. Rose Wallick

The effects of management practices on grassland birds—Clay-colored Sparrow (Spizella pallida) The effects of management practices on grassland birds—Clay-colored Sparrow (Spizella pallida)

Keys to Clay-colored Sparrow (Spizella pallida) management include providing grasslands with a shrub or forb component or shrub-dominated edge habitat, which includes dense grass and moderately high litter cover, and avoiding disturbances that completely eliminate woody vegetation. Clay-colored Sparrows have been reported to use habitats with 20–186 centimeters (cm) average vegetation...
Authors
Jill A. Shaffer, Lawrence D. Igl, Douglas H. Johnson, Marriah L. Sondreal, Christopher M. Goldade, Melvin P. Nenneman, Betty R. Euliss

Landscape configuration influences Oma‘o (Myadestes obscurus) song diversity Landscape configuration influences Oma‘o (Myadestes obscurus) song diversity

Acoustic communication in the form of songs is a learned behavior in oscine that can be passed down from one generation to the next through cultural transmission. Over time songs can change when populations become isolated from one another, creating dialects that are distinct to a population. Habitat fragmentation is an isolating mechanism that can influence differences in songs between
Authors
Nicole Fernandez, Kristina L. Paxton, Eben H. Paxton, Adam A. Pack, Patrick J. Hart

Genetic diversity, structure, and effective population size of an endangered, endemic hoary bat, ʻōpeʻapeʻa, across the Hawaiian Islands Genetic diversity, structure, and effective population size of an endangered, endemic hoary bat, ʻōpeʻapeʻa, across the Hawaiian Islands

Island bat species are disproportionately at risk of extinction, and Hawaiʻi’s only native terrestrial land mammal, the Hawaiian hoary bat (Lasiurus semotus) locally known as ʻōpeʻapeʻa, is no exception. To effectively manage this bat species with an archipelago-wide distribution, it is important to determine the population size on each island and connectivity between islands. We used 18...
Authors
Corinna Pinzari, Mona Renee Bellinger, Donald K. Price, Frank J Bonaccorso

Context-dependent representation of within- and between-model uncertainty: Aggregating probabilistic predictions in infectious disease epidemiology Context-dependent representation of within- and between-model uncertainty: Aggregating probabilistic predictions in infectious disease epidemiology

Probabilistic predictions support public health planning and decision making, especially in infectious disease emergencies. Aggregating outputs from multiple models yields more robust predictions of outcomes and associated uncertainty. While the selection of an aggregation method can be guided by retrospective performance evaluations, this is not always possible. For example, if...
Authors
Emily Howerton, Michael C. Runge, Tiffany L. Bogich, Rebecca K. Borchering, Hidetoshi Inamine, Justin Lessler, Luke C Mullany, William J.M. Probert, Claire P. Smith, Shaun Truelove, Cècile Viboud, Katriona Shea
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