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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42871

Are Cisco and Lake Whitefish competitors? An analysis of historical fisheries in Michigan waters of the Upper Laurentian Great Lakes Are Cisco and Lake Whitefish competitors? An analysis of historical fisheries in Michigan waters of the Upper Laurentian Great Lakes

Historically, Cisco Coregonus artedi and Lake Whitefish Coregonus clupeaformis were abundant throughout the Laurentian Great Lakes, but overharvest, habitat degradation, and interactions with exotic species caused most populations to collapse by the mid-1900s. Strict commercial fishery regulations and improved environmental and ecological conditions allowed Cisco to partially recover...
Authors
Benjamin J. Rook, Michael J. Hansen, Charles R. Bronte

From site to system: Approaches for producing system-wide estimates of fish habitat in large rivers From site to system: Approaches for producing system-wide estimates of fish habitat in large rivers

Worldwide, many productive rivers are dam-regulated and rely on flow management strategies that must balance support of ecological processes with human water use. One component of evaluating this balance is to understand ecological consequences of alternative flow management strategies, which has often been accomplished by coupling population dynamics models with models that relate...
Authors
H. E. Robinson, Mark J. Henderson, Russell Perry, Damon H. Goodman, Nicholas A. Som

Resource selection functions based on hierarchical generalized additive models provide new insights into individual animal variation and species distribution Resource selection functions based on hierarchical generalized additive models provide new insights into individual animal variation and species distribution

Habitat selection studies are designed to generate predictions of species distributions or inference regarding general habitat associations and individual variation in habitat use. Such studies frequently involve either individually indexed locations gathered across limited spatial extents and analyzed using resource selection functions (RSFs) or spatially extensive locational data...
Authors
Jennifer D McCabe, John Clare, Tricia A. Miller, Todd E. Katzner, Jeff Cooper, Scott G. Somershoe, David Hanni, Christine A. Kelly, Robert Sargent, Eric C. Soehren, Carrie Threadgill, Mercedes Maddox, Jonathan Stober, Mark S. Martell, Thomas Salo, Andrew Berry, Michael J. Lanzone, Melissa A. Braham, Christopher J.W. McClure

Changes in vegetation structure and gopher tortoise population structure after 17 years of restoration management Changes in vegetation structure and gopher tortoise population structure after 17 years of restoration management

We examined a study plot sampled in the Conecuh National Forest of southern Alabama in 1999 and again in 2016 after stand thinning and persistent prescribed fire were used to improve habitat quality. These management activities were designed, in part, to enhance habitat quality for the gopher tortoise (Gopherus polyphemus), a species considered for protection under the Endangered Species...
Authors
Rebecca C. Pudner, Hardin Waddle, Suzi P. Mersmann, John S. Kush, Craig Guyer, Sharon M. Hermann

Testing a generalizable machine learning workflow for aquatic invasive species on Rainbow Trout (Oncorhynchus mykiss) in northwest Montana Testing a generalizable machine learning workflow for aquatic invasive species on Rainbow Trout (Oncorhynchus mykiss) in northwest Montana

Biological invasions are accelerating worldwide, causing major ecological and economic impacts in aquatic ecosystems. The urgent decision-making needs of invasive species managers can be better met by the integration of biodiversity big data with large-domain models and data-driven products. Remotely sensed data products can be combined with existing invasive species occurrence data via...
Authors
Sean C. Carter, Charles B. van Rees, Brian K. Hand, Clint C. Muhlfeld, Gordon Luikart, John S Kimball

Acute mortality in California tiger salamander (Ambystoma californiense) and Santa Cruz long-toed salamander (Ambystoma macrodactylum croceum) caused by Ribeiroia ondatrae (Class: Trematoda) Acute mortality in California tiger salamander (Ambystoma californiense) and Santa Cruz long-toed salamander (Ambystoma macrodactylum croceum) caused by Ribeiroia ondatrae (Class: Trematoda)

In early September 2019, a morbidity and mortality event affecting California tiger salamanders (Ambystoma californiense) and Santa Cruz long-toed salamanders (Ambystoma macrodactylum croceum) in late stages of metamorphosis was reported at a National Wildlife Refuge in Santa Cruz County, California, U.S.A. During the postmortem disease investigation, severe integumentary metacercarial...
Authors
Saskia Keller, Constance Roderick, Christopher Caris, Daniel A. Grear, Rebecca A. Cole

The effects of ENSO and the North American monsoon on mast seeding in two Rocky Mountain conifer species The effects of ENSO and the North American monsoon on mast seeding in two Rocky Mountain conifer species

We aimed to disentangle the patterns of synchronous and variable cone production (i.e. masting) and its relationship to climate in two conifer species native to dry forests of western North America. We used cone abscission scars to reconstruct ca 15 years of recent cone production in Pinus edulis and Pinus ponderosa, and used redundancy analysis to relate time series of annual cone...
Authors
Andreas Wion, Ian S. Pearse, Kyle C. Rodman, Thomas T. Veblen, Miranda D. Redmond

The ecology and evolution of synchronized reproduction in long-lived plants The ecology and evolution of synchronized reproduction in long-lived plants

Populations of many long-lived plants exhibit spatially synchronized seed production that varies extensively over time, so that seed production in some years is much higher than on average, while in others, it is much lower or absent. This phenomenon termed masting or mast seeding has important consequences for plant reproductive success, ecosystem dynamics and plant–human interactions...
Authors
Mario B. Pesendorfer, Davide Ascoli, Michal Bogdziewicz, Andrew Hacket-Pain, Ian S. Pearse, Giorgio Vacchiano

Modes of climate variability bridge proximate and evolutionary mechanisms of masting Modes of climate variability bridge proximate and evolutionary mechanisms of masting

There is evidence that variable and synchronous reproduction in seed plants (masting) correlates to modes of climate variability, e.g. El Niño Southern Oscillation and North Atlantic Oscillation. In this perspective, we explore the breadth of knowledge on how climate modes control reproduction in major masting species throughout Earth's biomes. We posit that intrinsic properties of...
Authors
Davide Ascoli, Andrew Hacket-Pain, Ian S. Pearse, Giorgio Vacchiano, Susanna Corti, Paolo Davini

Understanding mast seeding for conservation and land management Understanding mast seeding for conservation and land management

Masting, the intermittent and synchronous production of large seed crops, can have profound consequences for plant populations and the food webs that are built on their seeds. For centuries, people have recorded mast crops because of their importance in managing wildlife populations. In the past 30 years, we have begun to recognize the importance of masting in conserving and managing...
Authors
Ian S. Pearse, Andreas Wion, Angela Gonzalez, Mario B. Pesendorfer

Effects of hydrologic variability and remedial actions on first flush and metal loading from streams draining the Silverton caldera, 1992–2014 Effects of hydrologic variability and remedial actions on first flush and metal loading from streams draining the Silverton caldera, 1992–2014

This study examined water quality in the upper Animas River watershed, a mined watershed that gained notoriety following the 2015 Gold King mine release of acid mine drainage to downstream communities. Water-quality data were used to evaluate trends in metal concentrations and loads over a two-decade period. Selected sites included three sites on tributary streams and one main-stem site...
Authors
Tanya N Petach, Robert L. Runkel, Rory M. Cowie, Diane M. McKnight

Similarities and differences between two deadly Caribbean coral diseases: White plague and stony coral tissue loss disease Similarities and differences between two deadly Caribbean coral diseases: White plague and stony coral tissue loss disease

For several decades, white plagues (WPDs: WPD-I, II and III) and more recently, stony coral tissue loss disease (SCTLD) have significantly impacted Caribbean corals. These diseases are often difficult to separate in the field as they produce similar gross signs. Here we aimed to compare what we know about WPD and SCTLD in terms of: (1) pathology, (2) etiology, and (3) epizootiology. We...
Authors
Aldo Cróquer, Ernesto Weil, Caroline Rogers
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