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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42876

Assessing the impact of the Conservation Reserve Program on honey bee health Assessing the impact of the Conservation Reserve Program on honey bee health

Insect pollinators are critically important for maintaining U.S. food production and ecosystem health. The upper Midwest is home to more than 40 percent of all U.S. honey bee colonies and is considered by many beekeepers to be America’s last beekeeping refuge. Beekeepers come to this region because their honey bees require high-quality grassland and bee-friendly agricultural crops to...
Authors
Clint Otto

Evaluation of Chinook salmon (Oncorhynchus tshawytscha) fry survival at Lookout Point Reservoir, western Oregon, 2017 Evaluation of Chinook salmon (Oncorhynchus tshawytscha) fry survival at Lookout Point Reservoir, western Oregon, 2017

A field study was conducted to estimate survival of fry-sized juvenile Chinook salmon (Oncorhynchus tshawytscha) in Lookout Point Reservoir, western Oregon, during 2017. The field study consisted of releasing three groups of genetically marked fish in the reservoir and monthly fish sampling. Fish were released during April 18–19 (43,950 fish), May 30–June 2 (44,145 fish), and on June 28...
Authors
Tobias J. Kock, Russell W. Perry, Gabriel S. Hansen, Philip V. Haner, Adam C. Pope, John M. Plumb, Karen M. Cogliati, Amy C. Hansen

Sediment trapping and carbon sequestration in floodplains of the lower Atchafalaya Basin, LA: Allochthonous vs. autochthonous carbon sources Sediment trapping and carbon sequestration in floodplains of the lower Atchafalaya Basin, LA: Allochthonous vs. autochthonous carbon sources

Recent studies suggest that about 2 Pg of organic C is stored on floodplains worldwide. The present study indicates the Atchafalaya River, fifth largest river in the United States in terms of discharge, traps 30 mm/y of sediment on average within its floodplain, which is the highest average non‐episodic rate of fluvial deposition on the U.S. Coastal Plain. We installed sediment sampling...
Authors
Cliff R. Hupp, Daniel E. Kroes, Gregory E. Noe, Edward R. Schenk, Richard H. Day

Assessing causes of mortality for endangered juvenile Lost River suckers (Deltistes luxatus) in mesocosms in Upper Klamath Lake, south-central Oregon, 2016 Assessing causes of mortality for endangered juvenile Lost River suckers (Deltistes luxatus) in mesocosms in Upper Klamath Lake, south-central Oregon, 2016

Executive Summary The recovery of endangered Lost River suckers (Deltistes luxatus) in Upper Klamath Lake, south-central Oregon, has been impeded because juveniles are not recruiting into adult spawning populations. Adult sucker populations spawn each spring but mortality of age-0 suckers during their first summer is excessively high, and recruitment of juveniles into adult populations...
Authors
Danielle M. Hereford, Carla M. Conway, Summer M. Burdick, Diane G. Elliott, Todd M. Perry, Amari Dolan-Caret, Alta C. Harris

Hydrodynamic controls on sediment retention in an emerging diversion-fed delta Hydrodynamic controls on sediment retention in an emerging diversion-fed delta

The morphodynamics of river-dominated deltas are largely controlled by the supply and retention of sediment within deltaic wetlands and the rate of relative sea-level rise. Yet, sediment budgets for deltas are often poorly constrained. In the Mississippi River Delta, a system rapidly losing land due to natural and anthropogenic causes, restoration efforts seek to build new land through...
Authors
Molly E. Keogh, Alexander S. Kolker, Gregg A. Snedden, Alisha A. Renfro

Dynamic N-mixture models with temporal variability in detection probability Dynamic N-mixture models with temporal variability in detection probability

In theory parameters of dynamic N-mixture models can be estimated with multiple years of data without the robust design under the assumption of constant detection probability. However, such an assumption can rarely be met in long-term studies, and the consequences of violating this assumption in the inferences of dynamic N-mixture models have not been assessed. In this study we used...
Authors
Qing Zhao, J. Andrew Royle

Resource selection and wintering phenology of White-winged Scoters in southern New England: Implications for offshore wind energy development Resource selection and wintering phenology of White-winged Scoters in southern New England: Implications for offshore wind energy development

Southern New England provides key wintering habitat for White-winged Scoters (Melanitta fusca). This area has also pioneered the development of offshore wind energy in North America and the U.S. Bureau of Ocean Energy Management (BOEM) has established nine Wind Energy Area (WEA) lease blocks along the Atlantic Outer Continental Shelf in areas that may provide important staging and...
Authors
Dustin E. Meattey, Scott R. McWilliams, Peter W.C. Paton, Christine Lepage, Scott G. Gilliland, Lucas Savoy, Glenn H. Olsen, Jason E. Osenkowski

Complex immune responses and molecular reactions to pathogens and disease in a desert reptile (Gopherus agassizii) Complex immune responses and molecular reactions to pathogens and disease in a desert reptile (Gopherus agassizii)

Immune function plays an important role in an animal's defense against infectious disease. In reptiles, immune responses may be complex and counterintuitive, and diagnostic tools used to identify infection, such as induced antibody responses are limited. Recent studies using gene transcription profiling in tortoises have proven useful in identifying immune responses to various intrinsic...
Authors
K. Kristina Drake, Christina M. Aiello, Lizabeth Bowen, Rebecca L. Lewison, Todd Esque, Kenneth E. Nussear, Shannon C. Waters-Dynes, Peter J. Hudson

Phylogeography and evolution of infectious hematopoietic necrosis virus in China Phylogeography and evolution of infectious hematopoietic necrosis virus in China

Infectious hematopoietic necrosis virus (IHNV) is a well-known rhabdoviral pathogen of salmonid fish. In this study, a comprehensive analysis of 40 IHNV viruses isolated from thirteen fish farms in nine geographically dispersed Chinese provinces during 2012 to 2017 is presented. Identity of nucleotide and amino acid sequences among all the complete glycoprotein (G) genes from Chinese...
Authors
Liming Xu, Jingzhuang Zhao, Miao Liu, Gael Kurath, Rachel B. Breyta, Guangming Ren, Jiasheng Yin, Hongbai Liu, Tongyan Lu

Occupancy models for citizen-science data Occupancy models for citizen-science data

Large‐scale citizen‐science projects, such as atlases of species distribution, are an important source of data for macroecological research, for understanding the effects of climate change and other drivers on biodiversity, and for more applied conservation tasks, such as early‐warning systems for biodiversity loss.However, citizen‐science data are challenging to analyse because the...
Authors
Res Altwegg, James D. Nichols

Per- and polyfluoroalkyl substances (PFAS) in plasma of the West Indian manatee (Trichechus manatus) Per- and polyfluoroalkyl substances (PFAS) in plasma of the West Indian manatee (Trichechus manatus)

Per- and polyfluoroalkyl substances (PFAS) are ubiquitous, synthetic anthropogenic chemicals known to infiltrate and persist in biological systems as a result of their stability and bioaccumulation potential. This study investigated 15 PFAS, including short-chain carboxylic and sulfonic acids, and their presence in a threatened herbivore, the West Indian manatee (Trichechus manatus)...
Authors
Kady Palmer, Jacqueline T. Bangma, Jessica L. Reiner, Robert K. Bonde, Jeffrey E. Korte, Ashley S. P. Boggs, John A. Bowden

Wasting disease and static environmental variables drive sea star assemblages in the northern Gulf of Alaska Wasting disease and static environmental variables drive sea star assemblages in the northern Gulf of Alaska

Sea stars are ecologically important in rocky intertidal habitats where they can play an apex predator role, completely restructuring communities. The recent sea star die-off throughout the eastern Pacific, known as Sea Star Wasting Disease, has prompted a need to understand spatial and temporal patterns of sea star assemblages and the environmental variables that structure these...
Authors
Brenda Konar, Timothy J. Mitchell, K. Iken, Thomas Dean, Daniel Esler, Mandy Lindeberg, Benjamin Pister, Ben P. Weitzman
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