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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42876

Integrating animal movement with habitat suitability for estimating dynamic migratory connectivity Integrating animal movement with habitat suitability for estimating dynamic migratory connectivity

Context High-resolution animal movement data are becoming increasingly available, yet having a multitude of empirical trajectories alone does not allow us to easily predict animal movement. To answer ecological and evolutionary questions at a population level, quantitative estimates of a species’ potential to link patches or populations are of importance.Objectives We introduce an...
Authors
Marielle L. van Toor, Bart Kranstauber, Scott H. Newman, Diann J. Prosser, John Y. Takekawa, Georgios Technitis, Robert Weibel, Martin Wikelski, Kamran Safi

Thresholds and hotspots for shrub restoration following a heterogeneous megafire Thresholds and hotspots for shrub restoration following a heterogeneous megafire

Context Reestablishing foundational plant species through aerial seeding is an essential yet challenging step for restoring the vast semiarid landscapes impacted by plant invasions and wildfire-regime shifts. A key component of the challenge stems from landscape variability and its effects on plant recovery.Objectives We assessed landscape correlates, thresholds, and tipping points for...
Authors
Matthew Germino, David Barnard, Bill Davidson, Robert Arkle, David S. Pilliod, Matthew Fisk, Cara Applestein

Diurnal patterns of methane flux from a seasonal wetland: mechanisms and methodology Diurnal patterns of methane flux from a seasonal wetland: mechanisms and methodology

Methane emissions from wetlands are temporally dynamic. Few chamber-based studies have explored diurnal variation in methane flux with high temporal replication. Using an automated sampling system, we measured methane flux every 2.5 to 4 h for 205 diel cycles during three growing seasons (2013–2015) from a seasonal wetland in the Prairie Pothole Region of North America. During ponded...
Authors
Sheel Bansal, Brian Tangen, Raymond Finocchiaro

Dryland photoautotrophic soil surface communities endangered by global change Dryland photoautotrophic soil surface communities endangered by global change

Photoautotrophic surface communities forming biological soil crusts (biocrusts) are crucial for soil stability as well as water, nutrient and trace gas cycling at regional and global scales. Quantitative information on their global coverage and the environmental factors driving their distribution patterns, however, are not readily available. We use observations and environmental...
Authors
Emilio Rodriguez-Caballero, Jayne Belnap, Burkhard Budel, Paul J. Crutzen, Meinrat O. Andreae, Ulrich Poschl, Bettina Weber

A guide to processing bat acoustic data for the North American Bat Monitoring Program (NABat) A guide to processing bat acoustic data for the North American Bat Monitoring Program (NABat)

The North American Bat Monitoring Program (NABat) aims to improve the state of conservation science for all species of bats shared by the United States, Canada, and Mexico. To accomplish this goal, NABat offers guidance and standardized protocols for acoustic monitoring of bats. In this document, “A Guide to Processing Bat Acoustic Data for the North American Bat Monitoring Program...
Authors
Brian E. Reichert, Cori Lausen, Susan Loeb, Ted Weller, Ryan Allen, Eric Britzke, Tara Hohoff, Jeremy Siemers, Braden Burkholder, Carl Herzog, Michelle Verant

The complete mitochondrial genome of the stalk-forming diatom Didymosphenia geminata The complete mitochondrial genome of the stalk-forming diatom Didymosphenia geminata

The complete mitogenome of the stalk-forming diatom Didymosphenia geminata collected from Mineral County, WV, USA was sequenced on the Ion Torrent PGM and Proton sequencers. The D. geminata mitogenome is 37,765 bp and encodes 35 protein coding genes, 25 tRNAs, and both large and small subunit ribosomal RNA genes. The nad11 gene is split into two domains as observed in Phaeodactylum...
Authors
Aaron W. Aunins, Donald Hamilton, Tim L. King

Divergent effects of land-use, propagule pressure, and climate on woody riparian invasion Divergent effects of land-use, propagule pressure, and climate on woody riparian invasion

Landscape-scale analyses of biological invasion are needed to understand the relative importance of environmental drivers that vary at larger scales, such as climate, propagule pressure, resource availability, and human disturbance. One poorly understood landscape-scale question is, how does human land-use influence riparian plant invasion? To evaluate the relative importance of land-use...
Authors
Laura G Perry, Lindsay V. Reynolds, Patrick B. Shafroth

Protection from UV light is an evolutionarily conserved feature of the haematopoietic niche Protection from UV light is an evolutionarily conserved feature of the haematopoietic niche

Haematopoietic stem and progenitor cells (HSPCs) require a specific microenvironment, the haematopoietic niche, which regulates HSPC behaviour. The location of this niche varies across species, but the evolutionary pressures that drive HSPCs to different microenvironments remain unknown. The niche is located in the bone marrow in adult mammals, whereas it is found in other locations in...
Authors
Friedrich G. Kapp, Julie R. Perlin, Elliott J. Hagedorn, John M. Gansner, Daniel E. Schwarz, Lauren A. O’Connell, Nicholas S. Johnson, Chris Amemiya, David E. Fisher, Ute Wolfle, Eirini Trompouki, Charlotte M. Niemeyer, Wolfgang Driever, Leonard I. Zon

Cyanobacteria reduce quagga mussel (Dreissena rostriformis bugensis) spawning and fertilization success Cyanobacteria reduce quagga mussel (Dreissena rostriformis bugensis) spawning and fertilization success

Quagga mussels (Dreissena rostriformis bugensis) are highly fecund broadcast spawners invasive to freshwaters of North America and western Europe. We hypothesized that environmental cues from phytoplankton can trigger gamete release in quagga mussels. Nutritious algae may stimulate dreissenid spawning, but less palatable food, such as bloom-forming cyanobacteria, could be a hindrance...
Authors
Anna G. Boegehold, Nicholas S. Johnson, Jeffrey L. Ran, Donna R. Kashian

Characterization of Sea Lamprey stream entry using dual‐frequency identification sonar Characterization of Sea Lamprey stream entry using dual‐frequency identification sonar

Effective methods to control invasive Sea Lampreys Petromyzon marinus in the Laurentian Great Lakes often rely on knowledge of the timing of the Sea Lamprey spawning migration, which has previously been characterized using data gathered from traps. Most assessment traps are located many kilometers upstream from the river mouth, so less is known about when Sea Lampreys enter spawning...
Authors
Erin L. McCain, Nicholas S. Johnson, Peter J. Hrodey, Kevin L. Pangle

A distributed pipeline for DIDSON data processing A distributed pipeline for DIDSON data processing

Technological advances in the field of ecology allow data on ecological systems to be collected at high resolution, both temporally and spatially. Devices such as Dual-frequency Identification Sonar (DIDSON) can be deployed in aquatic environments for extended periods and easily generate several terabytes of underwater surveillance data which may need to be processed multiple times. Due...
Authors
Liling Li, Tyler Danner, Jesse Eickholt, Erin L. McCann, Kevin Pangle, Nicholas S. Johnson

Multistate models of bigheaded carps in the Illinois River reveal spatial dynamics of invasive species Multistate models of bigheaded carps in the Illinois River reveal spatial dynamics of invasive species

Knowledge of the spatial distributions and dispersal characteristics of invasive species is necessary for managing the spread of highly mobile species, such as invasive bigheaded carps (Bighead Carp [Hypophthalmichthys nobilis] and Silver Carp [H. molitrix]). Management of invasive bigheaded carps in the Illinois River has focused on using human-made barriers and harvest to limit...
Authors
Alison A. Coulter, Marybeth K. Brey, Matthew Lubejko, Jahn L. Kallis, David P. Coulter, David C. Glover, James E. Garvey, Gregory W. Whitledge
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