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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42704

Carnivore hotspots in Peninsular Malaysia and their landscape attributes Carnivore hotspots in Peninsular Malaysia and their landscape attributes

Mammalian carnivores play a vital role in ecosystem functioning. However, they are prone to extinction because of low population densities and growth rates, and high levels of persecution or exploitation. In tropical biodiversity hotspots such as Peninsular Malaysia, rapid conversion of natural habitats threatens the persistence of this vulnerable group of animals. Here, we carried out...
Authors
Shyamala Ratnayeke, Frank T. van Manen, Gopalasamy Reuben Clements, Noor Azleen Mohd Kulaimi, Stuart P. Sharp

Model structure of the stream salmonid simulator (S3)—A dynamic model for simulating growth, movement, and survival of juvenile salmonids Model structure of the stream salmonid simulator (S3)—A dynamic model for simulating growth, movement, and survival of juvenile salmonids

Fisheries and water managers often use population models to aid in understanding the effect of alternative water management or restoration actions on anadromous fish populations. We developed the Stream Salmonid Simulator (S3) to help resource managers evaluate the effect of management alternatives on juvenile salmonid populations. S3 is a deterministic stage-structured population model...
Authors
Russell W. Perry, John M. Plumb, Edward C. Jones, Nicholas A. Som, Nicholas J. Hetrick, Thomas B. Hardy

The future of fish passage science, engineering, and practice The future of fish passage science, engineering, and practice

Much effort has been devoted to developing, constructing and refining fish passage facilities to enable target species to pass barriers on fluvial systems, and yet, fishway science, engineering and practice remain imperfect. In this review, 17 experts from different fish passage research fields (i.e., biology, ecology, physiology, ecohydraulics, engineering) and from different continents...
Authors
Ana T. Silva, Martyn C. Lucas, Theodore R. Castro-Santos, Christos Katopodis, Lee J. Baumgartner, Jason D. Thiem, Kim Aarestrup, Paulo S. Pompeu, Gordon C. O’Brien, Douglas C. Braun, Nicholas J. Burnett, David Z. Zhu, Hans-Petter Fjeldstad, Torbjorn Forseth, Nallamuthu Rajarathnam, John G. Williams, Steven J. Cooke

Influenza A virus recovery, diversity, and intercontinental exchange: A multi-year assessment of wild bird sampling at Izembek National Wildlife Refuge, Alaska Influenza A virus recovery, diversity, and intercontinental exchange: A multi-year assessment of wild bird sampling at Izembek National Wildlife Refuge, Alaska

Western Alaska is a potential point-of-entry for foreign-origin influenza A viruses (IAVs) into North America via migratory birds. We sampled waterfowl and gulls for IAVs at Izembek National Wildlife Refuge (NWR) in western Alaska, USA, during late summer and autumn months of 2011–2015, to evaluate the abundance and diversity of viruses at this site. We collected 4842 samples across five...
Authors
Andrew B. Reeves, Jeffery S. Hall, Rebecca L. Poulson, Tyrone F. Donnelly, David E. Stallknecht, Andrew M. Ramey

Montane-breeding bird distribution and abundance across national parks of southwestern Alaska Montane-breeding bird distribution and abundance across national parks of southwestern Alaska

Between 2004 and 2008, biologists conducted an inventory of breeding birds during May–June primarily in montane areas (>100 m above sea level) in Aniakchak National Monument and Preserve (Aniakchak NMP), Katmai National Park and Preserve (Katmai NPP), and Lake Clark National Park and Preserve (Lake Clark NPP) in southwestern Alaska. Observers conducted 1,021 point counts along 169...
Authors
Courtney L. Amundson, Colleen M. Handel, Daniel R. Ruthrauff, T. Lee Tibbitts, Robert E. Gill

N-mix for fish: estimating riverine salmonid habitat selection via N-mixture models N-mix for fish: estimating riverine salmonid habitat selection via N-mixture models

Models that formulate mathematical linkages between fish use and habitat characteristics are applied for many purposes. For riverine fish, these linkages are often cast as resource selection functions with variables including depth and velocity of water and distance to nearest cover. Ecologists are now recognizing the role that detection plays in observing organisms, and failure to...
Authors
Nicholas A. Som, Russell W. Perry, Edward C. Jones, Kyle De Juilio, Paul Petros, William D. Pinnix, Derek L. Rupert

Relating river discharge and water temperature to the recruitment of age‐0 White Sturgeon (Acipenser transmontanus Richardson, 1836) in the Columbia River using over‐dispersed catch data Relating river discharge and water temperature to the recruitment of age‐0 White Sturgeon (Acipenser transmontanus Richardson, 1836) in the Columbia River using over‐dispersed catch data

The goals were to (i) determine if river discharge and water temperature during various early life history stages were predictors of age‐0 White Sturgeon, Acipenser transmontanus, recruitment, and (ii) provide an example of how over‐dispersed catch data, including data with many zero observations, can be used to better understand the effects of regulated rivers on the productivity of...
Authors
Timothy D. Counihan, Colin G. Chapman

Biological and ecological science for Michigan—The Great Lakes State Biological and ecological science for Michigan—The Great Lakes State

Michigan is rich in lakes, rivers, dune and rocky shorelines, forests, fish and wildlife, and has the longest freshwater coastline in the United States, 3,224 miles. Many enterprises critical to Michigan’s economy and cultural heritage are based on natural resources including commercial and sport fishing, hunting, and other outdoor recreation. Overall, outdoor recreation is enjoyed by...
Authors
Water Resources Division U.S. Geological Survey

Distribution and seasonal differences in Pacific Lamprey and Lampetra spp eDNA across 18 Puget Sound watersheds Distribution and seasonal differences in Pacific Lamprey and Lampetra spp eDNA across 18 Puget Sound watersheds

Lampreys have a worldwide distribution, are functionally important to ecological communities and serve significant roles in many cultures. In Pacific coast drainages of North America, lamprey populations have suffered large declines. However, lamprey population status and trends within many areas of this region are unknown and such information is needed for advancing conservation goals...
Authors
Carl O. Ostberg, Dorothy M. Chase, Michael C. Hayes, Jeffrey J. Duda

Convergent validity between willingness to pay elicitation methods: An application to Grand Canyon whitewater boaters Convergent validity between willingness to pay elicitation methods: An application to Grand Canyon whitewater boaters

We directly compare trip willingness to pay (WTP) values between dichotomous choice contingent valuation (DCCV) and discrete choice experiment (DCE) stated preference surveys of private party Grand Canyon whitewater boaters. The consistency of DCCV and DCE estimates is debated in the literature, and this study contributes to the body of work comparing the methods. Comparisons were made...
Authors
Christopher Neher, Lucas S. Bair, John Duffield, David A. Patterson, Katherine Neher

A laboratory-calibrated model of coho salmon growth with utility for ecological analyses A laboratory-calibrated model of coho salmon growth with utility for ecological analyses

We conducted a meta-analysis of laboratory- and hatchery-based growth data to estimate broadly applicable parameters of mass- and temperature-dependent growth of juvenile coho salmon (Oncorhynchus kisutch). Following studies of other salmonid species, we incorporated the Ratkowsky growth model into an allometric model and fit this model to growth observations from eight studies spanning...
Authors
Christopher V. Manhard, Nicholas A. Som, Russell W. Perry, John M. Plumb

Herbivory and eutrophication mediate grassland plant nutrient responses across a global climatic gradient Herbivory and eutrophication mediate grassland plant nutrient responses across a global climatic gradient

Plant stoichiometry, the relative concentration of elements, is a key regulator of ecosystem functioning and is also being altered by human activities. In this paper we sought to understand the global drivers of plant stoichiometry and compare the relative contribution of climatic vs. anthropogenic effects. We addressed this goal by measuring plant elemental (C, N, P and K) responses to
Authors
T. Michael Anderson, Daniel M. Griffith, James B. Grace, Eric M. Lind, Peter B. Adler, Lori A. Biederman, Dana M. Blumenthal, Pedro Daleo, Jennifer Firn, Nicole Hagenah, W. Stanley Harpole, Andrew S. MacDougall, Rebecca L. McCulley, Suzanne M. Prober, Anita C. Risch, Mahesh Sankaran, Martin Schutz, Eric W. Seabloom, Carly J. Stevens, Lauren Sullivan, Peter Wragg, Elizabeth T. Borer
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