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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42702

Ethanol and sodium acetate as a preservation method to delay degradation of environmental DNA Ethanol and sodium acetate as a preservation method to delay degradation of environmental DNA

Environmental DNA (eDNA) samples that are collected from remote locations depend on rapid stabilization of the DNA. The degradation of eDNA in water samples is minimized when samples are stored at ≤ 4 °C. Developing a preservation technique to maintain eDNA integrity at room temperature would allow a wider range of locations to be sampled. We evaluated an ethanol and sodium acetate...
Authors
Bridget A. Ladell, Liza R. Walleser, S. Grace McCalla, Richard A. Erickson, Jon Amberg

Remote measurement of canopy water content in giant sequoias (Sequoiadendron giganteum) during drought Remote measurement of canopy water content in giant sequoias (Sequoiadendron giganteum) during drought

California experienced severe drought from 2012 to 2016, and there were visible changes in the forest canopy throughout the State. In 2014, unprecedented foliage dieback was recorded in giant sequoia (Sequoiadendron giganteum) trees in Sequoia National Park, in the southern California Sierra Nevada mountains. Although visible changes in sequoia canopies can be recorded, biochemical and
Authors
Roberta E. Martin, Gregory P. Asner, Emily Francis, Anthony Ambrose, Wendy Baxter, Adrian J. Das, Nicolas R. Vaughn, Tarin Paz-Kagan, Todd E. Dawson, Koren R. Nydick, Nathan L. Stephenson

The role of the upper tidal estuary in wetland blue carbon storage and flux The role of the upper tidal estuary in wetland blue carbon storage and flux

Carbon (C) standing stocks, C mass balance, and soil C burial in tidal freshwater forested wetlands (TFFW) and TFFW transitioning to low‐salinity marshes along the upper estuary are not typically included in “blue carbon” accounting, but may represent a significant C sink. Results from two salinity transects along the tidal Waccamaw and Savannah rivers of the US Atlantic Coast show total...
Authors
Ken W. Krauss, Gregory B. Noe, Jamie A. Duberstein, William H. Conner, Camille L. Stagg, Nicole Cormier, Miriam C. Jones, Christopher E. Bernhardt, B. Graeme Lockaby, Andrew S. From, Thomas W. Doyle, Richard H. Day, Scott H. Ensign, Katherine N. Pierfelice, Cliff R. Hupp, Alex T. Chow, Julie L. Whitbeck

Lethal and sublethal responses of native mussels (Unionidae: Lampsilis siliquoidea and Lampsilis higginsii) to elevated carbon dioxide Lethal and sublethal responses of native mussels (Unionidae: Lampsilis siliquoidea and Lampsilis higginsii) to elevated carbon dioxide

Levels of carbon dioxide (CO2) that have been proposed for aquatic invasive species control (24 000 – 96 000 μatm partial pressure of CO2 (PCO2); 1 atm = 101.325 kPa) were tested on two juvenile mussels, the fatmucket (Lampsilis siliquoidea) and the US federally endangered Higgins’ eye (Lampsilis higginsii). A suite of responses (survival, growth, behavior, and gene expression) were...
Authors
Diane L. Waller, Michelle R. Bartsch, Lynn A. Bartsch, Craig Jackson

Rediscovery of the type series of the Acadian Masked Shrew, Sorex acadicus Gilpin, 1865 (Mammalia: Soricidae), with the designation of a neotype and a reevaluation of its taxonomic status Rediscovery of the type series of the Acadian Masked Shrew, Sorex acadicus Gilpin, 1865 (Mammalia: Soricidae), with the designation of a neotype and a reevaluation of its taxonomic status

The name Sorex acadicus Gilpin, 1865 is currently recognized as the valid name for the Nova Scotian subspecies of the masked shrew, S. cinereus Kerr, 1792 (Mammalia: Soricidae), but a holotype for the taxon was never designated, and the location of the type series has been a mystery. The authority for this species, John Bernard Gilpin, was associated with the Nova Scotia Museum, Halifax...
Authors
Neal Woodman

Status and trends of adult Lost River (Deltistes luxatus) and shortnose (Chasmistes brevirostris) sucker populations in Upper Klamath Lake, Oregon, 2017 Status and trends of adult Lost River (Deltistes luxatus) and shortnose (Chasmistes brevirostris) sucker populations in Upper Klamath Lake, Oregon, 2017

Executive Summary Data from a long-term capture-recapture program were used to assess the status and dynamics of populations of two long-lived, federally endangered catostomids in Upper Klamath Lake, Oregon. Lost River suckers (LRS; Deltistes luxatus) and shortnose suckers (SNS; Chasmistes brevirostris) have been captured and tagged with passive integrated transponder (PIT) tags during...
Authors
David A. Hewitt, Eric C. Janney, Brian S. Hayes, Alta C. Harris

Helping decision makers frame, analyze, and implement decisions Helping decision makers frame, analyze, and implement decisions

All decisions have the same recognizable elements. Context, objectives, alternatives, consequences, and deliberation. Decision makers and analysts familiar with these elements can quickly see the underlying structure of a decision. There are only a small number of classes of decisions. These classes differ in the cognitive and scientific challenge they present to the decision maker; the...
Authors
Michael C. Runge, Eve McDonald-Madden

Spatial, road geometric, and biotic factors associated with Barn Owl mortality along an interstate highway Spatial, road geometric, and biotic factors associated with Barn Owl mortality along an interstate highway

Highway programs typically focus on reducing vehicle collisions with large mammals because of economic or safety reasons while overlooking the millions of birds that die annually from traffic. We studied wildlife‐vehicle collisions along an interstate highway in southern Idaho, USA, with among the highest reported rates of American Barn Owl Tyto furcata road mortality. Carcass data from...
Authors
Erin M. Arnold, Steve E. Hanser, Tempe Regan, Jeremy Thompson, Melinda Lowe, Angela Kociolek, James R. Belthoff

Establishment of the exotic invasive Cuban treefrog (Osteopilus septentrionalis) in Louisiana Establishment of the exotic invasive Cuban treefrog (Osteopilus septentrionalis) in Louisiana

The Cuban treefrog, Osteopilus septentrionalis, is native to Cuba, the Bahamas, and the Cayman Islands, and is invasive in areas where it has been introduced and established in the Caribbean as well as Florida. Despite repeated occurrences in several states over many years, it was not believed that Cuban treefrogs had successfully established outside of Florida in the mainland United...
Authors
Brad M. Glorioso, J. Hardin Waddle, Lindy J. Muse, Nicole D. Jennings, Melanie Litton, Joel Hamilton, Steven Gergen, David Heckard

Nitrogen cycling in large temperate floodplain rivers of contrasting nutrient regimes and management Nitrogen cycling in large temperate floodplain rivers of contrasting nutrient regimes and management

Hydraulic connection between channels and floodplains (“connectivity”) is a fundamental determinant of ecosystem function in large floodplain rivers. Factors controlling material processing in these rivers depend not only on the degree of connectivity but also on the sediment conditions, nutrient loads, and source. Nutrient cycling in the nutrient‐rich upper Mississippi River (MISS) is...
Authors
William B. Richardson, Lynn A. Bartsch, Michelle Bartsch, Richard L. Kiesling, Brenda Mroska-LaFrancois

The Florida manatee (Trichechus manatus latirostris) T cell receptor loci exhibit V subgroup synteny and chain-specific evolution The Florida manatee (Trichechus manatus latirostris) T cell receptor loci exhibit V subgroup synteny and chain-specific evolution

The Florida manatee (Trichechus manatus latirostris) has limited diversity in the immunoglobulin heavy chain. We therefore investigated the antigen receptor loci of the other arm of the adaptive immune system: the T cell receptor. Manatees are the first species from Afrotheria, a basal eutherian superorder, to have an in-depth characterization of all T cell receptor loci. By annotating...
Authors
Breanna Breaux, Margaret Hunter, Maria Paula Cruz-Schneider, Leonardo Sena, Robert K. Bonde, Michael F. Criscitiello

Juvenile Lost River and shortnose sucker year class strength, survival, and growth in Upper Klamath Lake, Oregon, and Clear Lake Reservoir, California—2016 Monitoring Report Juvenile Lost River and shortnose sucker year class strength, survival, and growth in Upper Klamath Lake, Oregon, and Clear Lake Reservoir, California—2016 Monitoring Report

Executive Summary The largest populations of federally endangered Lost River (Deltistes luxatus) and shortnose suckers (Chasmistes brevirostris) exist in Upper Klamath Lake, Oregon, and Clear Lake Reservoir, California. Upper Klamath Lake populations are decreasing because adult mortality, which is relatively low, is not being balanced by recruitment of young adult suckers into known...
Authors
Summer M. Burdick, Carl O. Ostberg, Marshal S. Hoy
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