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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42719

A 184-year record of river meander migration from tree rings, aerial imagery, and cross sections A 184-year record of river meander migration from tree rings, aerial imagery, and cross sections

Channel migration is the primary mechanism of floodplain turnover in meandering rivers and is essential to the persistence of riparian ecosystems. Channel migration is driven by river flows, but short-term records cannot disentangle the effects of land use, flow diversion, past floods, and climate change. We used three data sets to quantify nearly two centuries of channel migration on...
Authors
Derek M. Schook, Sara L. Rathburn, Jonathan M. Friedman, J. Marshall Wolf

Methods for measuring bird-mediated seed rain: Insights from a Hawaiian mesic forest Methods for measuring bird-mediated seed rain: Insights from a Hawaiian mesic forest

Amount and diversity of bird-dispersed seed rain play important roles in determining forest composition, yet neither is easy to quantify. The complex ecological processes that influence seed movement make the best approach highly context specific. Although recent advances in seed rain theory emphasize quantifying source-specific seed shadows, many ecological questions can be addressed u...
Authors
Eli Rose, Meredith Stewart, Andrew Brinkman, Eben H. Paxton, Stephanie G. Yelenik

Evidence of absence (v2.0) software user guide Evidence of absence (v2.0) software user guide

Evidence of Absence software (EoA) is a user-friendly software application for estimating bird and bat fatalities at wind farms and for designing search protocols. The software is particularly useful in addressing whether the number of fatalities is below a given threshold and what search parameters are needed to give assurance that thresholds were not exceeded. The software also...
Authors
Daniel Dalthorp, Manuela M. Huso, David Dail

Fifty-eighth supplement to the American Ornithologists' Union: Check-list of North American Birds Fifty-eighth supplement to the American Ornithologists' Union: Check-list of North American Birds

This is the 17th supplement since publication of the 7th edition of the Check-list of North American Birds (American Ornithologists' Union [AOU] 1998). It summarizes decisions made between April 15, 2016, and April 15, 2017, by the AOS's Committee on Classification and Nomenclature—North and Middle America. The Committee has continued to operate in the manner outlined in the 42nd...
Authors
Terry Chesser, Kevin J Burns, Carla Cicero, Jon L. Dunn, Andrew W. Kratter, Irby J. Lovette, Pamela C. Rasmussen, J.V. Remsen, James D. Rising, Douglas F. Stotz, Kevin Winker

Historical changes in organic matter input to the muddy sediments along the Zhejiang-Fujian Coast, China over the past 160 years Historical changes in organic matter input to the muddy sediments along the Zhejiang-Fujian Coast, China over the past 160 years

The burial of sedimentary organic matter (SOM) in the large river-influenced estuarine-coastal regions is affected by hydrodynamic sorting, diagenesis and human activities. Typically, the inner shelf region of the East China Sea is a major carbon sink of the Yangtze River-derived fine-grained sediments. Most of the previous work concentrated on the studies of surface sediments or used a...
Authors
Li-lei Chen, Jian Liu, Lei Xing, Ken W. Krauss, Jia-sheng Wang, Gang Xu, Li Li

Cambrian origin of the CYP27C1-mediated vitamin A1-to-A2 switch, a key mechanism of vertebrate sensory plasticity Cambrian origin of the CYP27C1-mediated vitamin A1-to-A2 switch, a key mechanism of vertebrate sensory plasticity

The spectral composition of ambient light varies across both space and time. Many species of jawed vertebrates adapt to this variation by tuning the sensitivity of their photoreceptors via the expression of CYP27C1, an enzyme that converts vitamin A1 into vitamin A2, thereby shifting the ratio of vitamin A1-based rhodopsin to red-shifted vitamin A2-based porphyropsin in the eye. Here, we...
Authors
Ala Morshedian, Matthew B. Toomery, Gabriel E. Pollock, Rikard Frederiksen, Jennifer Enright, Stephen D. McCormick, M. Carter Cornwall, Gordon L. Fain, Joseph C. Corbo

Acquisition of Borrelia burgdorferi infection by larval Ixodes scapularis (Acari: Ixodidae) associated with engorgement measures Acquisition of Borrelia burgdorferi infection by larval Ixodes scapularis (Acari: Ixodidae) associated with engorgement measures

Measuring rates of acquisition of the Lyme disease pathogen, Borrelia burgdorferi sensu lato Johnson, Schmid, Hyde, Steigerwalt & Brenner, by the larval stage of Ixodes scapularis Say is a useful tool for xenodiagnoses of B. burgdorferi in vertebrate hosts. In the nymphal and adult stages of I. scapularis, the duration of attachment to hosts has been shown to predict both body...
Authors
Janelle Couret, M.C. Dyer, T.N. Mather, S. Han, J.I. Tsao, R.A. LeBrun, Howard S. Ginsberg

Adding a nitrogen footprint to Colorado State University’s sustainability plan Adding a nitrogen footprint to Colorado State University’s sustainability plan

As a large land grant university with more than 32,000 students, Colorado State University has both on-campus non-agricultural and agricultural sources of nitrogen (N) released to the environment. We used the Nitrogen Footprint Tool to estimate the amount of N released from different sectors of the university for the CSU 2014 academic year. The largest on campus sources were food...
Authors
Jacob Kimiecik, Jill Baron, Timothy Weinmann, Emily Taylor

Life history constraints explain negative relationship between fish productivity and dissolved organic carbon in lakes Life history constraints explain negative relationship between fish productivity and dissolved organic carbon in lakes

Resource availability constrains the life history strategies available to organisms and may thereby limit population growth rates and productivity. We used this conceptual framework to explore the mechanisms driving recently reported negative relationships between fish productivity and dissolved organic carbon (DOC) concentrations in lakes. We studied populations of bluegill (Lepomis...
Authors
Nicola Craig, Stuart E. Jones, Brian Weidel, Christopher T. Solomon

USGS Integration of New Science and Technology, Appendix A USGS Integration of New Science and Technology, Appendix A

This product summarizes the USGS plans for integration of new science and technology into Asian Carp control efforts for 2017. This includes the 1) implementation and evaluation of new tactics and behavioral information for monitoring, surveillance, control and containment; 2) understanding behavior and reproduction of Asian carp in established and emerging populations to inform...
Authors
Marybeth K. Brey, Brent C. Knights, Aaron R. Cupp, Jon Amberg, Duane Chapman, Robin D. Calfee, James J. Duncker

Understanding and finding solutions to the problem of sedimentation in the National Wildlife Refuge System Understanding and finding solutions to the problem of sedimentation in the National Wildlife Refuge System

The National Wildlife Refuge System (Refuge System) is a collection of public lands maintained by the U.S. Fish and Wildlife Service for migratory birds and other wildlife. Wetlands on individual National Wildlife Refuges (Refuges) may be at risk of increased sedimentation because of land use and water management practices. Increased sedimentation can reduce wetland habitat quality by...
Authors
Max Post van der Burg, Karen Jenni, Timothy L. Nieman, Josh D. Eash, Gregory A. Knutsen

Intra-reach headwater fish assemblage structure Intra-reach headwater fish assemblage structure

Large-scale conservation efforts can take advantage of modern large databases and regional modeling and assessment methods. However, these broad-scale efforts often assume uniform average habitat conditions and/or species assemblages within stream reaches.
Authors
James E. McKenna
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