Publications
This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.
Filter Total Items: 42729
Conservation status of the American horseshoe crab, (Limulus polyphemus): A regional assessment Conservation status of the American horseshoe crab, (Limulus polyphemus): A regional assessment
Horseshoe crabs have persisted for more than 200 million years, and fossil forms date to 450 million years ago. The American horseshoe crab (Limulus polyphemus), one of four extant horseshoe crab species, is found along the Atlantic coastline of North America ranging from Alabama to Maine, USA with another distinct population on the coasts of Campeche, Yucatán and Quintana Roo in the...
Authors
David R. Smith, H. Jane Brockmann, Mark A. Beekey, Tim L. King, Mike Millard, Jaime Zaldivar-Rae
Trawl-based assessment of Lake Ontario pelagic prey fishes including Alewife and Rainbow Smelt Trawl-based assessment of Lake Ontario pelagic prey fishes including Alewife and Rainbow Smelt
Managing Lake Ontario fisheries in an ecosystem-context, requires reliable data on the status and trends of prey fishes that support predator populations. We report on the community and population dynamics of Lake Ontario pelagic prey fishes, based on bottom trawl surveys. We emphasize information that supports the international Lake Ontario Committee’s Fish Community Objectives. In 2016...
Authors
Brian Weidel, Maureen Walsh, Michael J. Connerton, Jeremy P. Holden
Mallard (Anas platyrhynchos) mortality and recovery rates vary by wing molt status at time of banding Mallard (Anas platyrhynchos) mortality and recovery rates vary by wing molt status at time of banding
Recovery (i.e., shot, retrieved, and reported) rates and daily mortality risk of 52,330 adult Mallards (Anas platyrhynchos) leg-banded during pre-molt, in-molt, or post-molt during 1985–2011 were evaluated to better understand mortality during wing molt in dynamics of the Mallard population in California, USA. Recovery rates and non-hunting mortality risk varied by molt status at time of...
Authors
Joseph P. Fleskes, Brian J. Halstead, Jeffrey D. Kohl, Gregory S. Yarris
Assessment of contemporary genetic diversity and inter-taxa/inter-region exchange of avian paramyxovirus serotype 1 in wild birds sampled in North America Assessment of contemporary genetic diversity and inter-taxa/inter-region exchange of avian paramyxovirus serotype 1 in wild birds sampled in North America
Background Avian paramyxovirus serotype 1 (APMV-1) viruses are globally distributed, infect wild, peridomestic, and domestic birds, and sometimes lead to outbreaks of disease. Thus, the maintenance, evolution, and spread of APMV-1 viruses are relevant to avian health. Methods In this study we sequenced the fusion gene from 58 APMV-1 isolates recovered from thirteen species of wild birds...
Authors
Andrew M. Ramey, Iryna V. Goraichuk, Joseph T. Hicks, Kiril M. Dimitrov, Rebecca L. Poulson, David E. Stallknecht, Justin Bahl, Claudio L. Afonso
Five-year external reviews of the eight department of interior climate science centers Five-year external reviews of the eight department of interior climate science centers
No abstract available.
Authors
Jill B. Rolland, P. B. Duffy, Clifford Duke, David Helweg, Stephen L. Katz, Olivia E. LeDee, Steven Quiring
Potential concerns with analytical Methods Used for the detection of Batrachochytrium salamandrivorans from archived DNA of amphibian swab samples, Oregon, USA Potential concerns with analytical Methods Used for the detection of Batrachochytrium salamandrivorans from archived DNA of amphibian swab samples, Oregon, USA
Taxonomic identification of pollen has historically been accomplished via light microscopy but requires specialized knowledge and reference collections, particularly when identification to lower taxonomic levels is necessary. Recently, next-generation sequencing technology has been used as a cost-effective alternative for identifying bee-collected pollen; however, this novel approach has...
Authors
Deborah D. Iwanowicz, William B. Schill, Deanna H. Olson, M. J. Adams, Christine L. Densmore, Robert S. Cornman, Cynthia R. Adams, Chester Figiel, Chauncey W. Anderson, Andrew R Blaustein, Tara Chestnut
Contaminants of emerging concern in the Great Lakes Basin: A report on sediment, water, and fish tissue chemistry collected in 2010-2012 Contaminants of emerging concern in the Great Lakes Basin: A report on sediment, water, and fish tissue chemistry collected in 2010-2012
Despite being detected at low levels in surface waters and sediments across the United States, contaminants of emerging concern (CECs) in the Great Lakes Basin are not well characterized in terms of spatial and temporal occurrence. Additionally, although the detrimental effects of exposure to CECs on fish and wildlife have been documented for many CECs in laboratory studies, we do not...
Authors
Steven J. Choy, Mandy L. Annis, JoAnn Banda, Sarah R. Bowman, Mark E. Brigham, Sarah M. Elliott, Daniel J. Gefell, Mark D. Jankowski, Zachary G. Jorgenson, Kathy Lee, Jeremy N. Moore, William A. Tucker
Geochemistry and hydrology of perched groundwater springs: assessing elevated uranium concentrations at Pigeon Spring relative to nearby Pigeon Mine, Arizona (USA) Geochemistry and hydrology of perched groundwater springs: assessing elevated uranium concentrations at Pigeon Spring relative to nearby Pigeon Mine, Arizona (USA)
The processes that affect water chemistry as the water flows from recharge areas through breccia-pipe uranium deposits in the Grand Canyon region of the southwestern United States are not well understood. Pigeon Spring had elevated uranium in 1982 (44 μg/L), compared to other perched springs (2.7–18 μg/L), prior to mining operations at the nearby Pigeon Mine. Perched groundwater springs...
Authors
Kimberly R. Beisner, Nicholas V. Paretti, Fred D. Tillman, David L. Naftz, Donald J. Bills, Katherine Walton-Day, Tanya J. Gallegos
Shifts in microbial community structure and function in surface waters impacted by unconventional oil and gas wastewater revealed by metagenomics Shifts in microbial community structure and function in surface waters impacted by unconventional oil and gas wastewater revealed by metagenomics
Unconventional oil and gas (UOG) production produces large quantities of wastewater with complex geochemistry and largely uncharacterized impacts on surface waters. In this study, we assessed shifts in microbial community structure and function in sediments and waters upstream and downstream from a UOG wastewater disposal facility. To do this, quantitative PCR for 16S rRNA and antibiotic
Authors
N.L. Fahrenfeld, Hannah Delos Reyes, Alessia Eramo, Denise M. Akob, Adam Mumford, Isabelle M. Cozzarelli
Nonnative trout invasions combined with climate change threaten persistence of isolated cutthroat trout populations in the southern Rocky Mountains Nonnative trout invasions combined with climate change threaten persistence of isolated cutthroat trout populations in the southern Rocky Mountains
Effective conservation of Cutthroat Trout Oncorhynchus clarkii lineages native to the Rocky Mountains will require estimating effects of multiple stressors and directing management toward the most important ones. Recent analyses have focused on the direct and indirect effects of a changing climate on contemporary ranges, which are much reduced from historic ranges owing to past habitat...
Authors
James Roberts, Kurt D. Fausch, Mevin Hooten, Douglas P. Peterson
Grand challenges in the management and conservation of North American inland fishes and fisheries Grand challenges in the management and conservation of North American inland fishes and fisheries
Even with long-standing management and extensive science support, North American inland fish and fisheries still face many conservation and management challenges. We used a grand challenges approach to identify critical roadblocks that if removed would help solve important problems in the management and long-term conservation of North American inland fish and fisheries. We identified...
Authors
Abigail Lynch, Steven J. Cooke, Beard, Yu-Chun Kao, Kai Lorenzen, Andrew M. Song, Micheal S. Allen, Zeenatul Basher, David B. Bunnell, Edward V. Camp, Ian G. Cowx, Jonathan A. Freedman, Vivian M. Nguyen, Joel K. Nohner, Mark W. Rogers, Zachary A. Siders, William W. Taylor, So-Jung Youn
Ecology and space: A case study in mapping harmful invasive species Ecology and space: A case study in mapping harmful invasive species
The establishment and invasion of non-native plant species have the ability to alter the composition of native species and functioning of ecological systems with financial costs resulting from mitigation and loss of ecological services. Spatially documenting invasions has applications for management and theory, but the utility of maps is challenged by availability and uncertainty of data...
Authors
David T. Barnett, Catherine S. Jarnevich, Geneva W. Chong, Thomas J. Stohlgren, Sunil Kumar, Tracy R. Holcombe