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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 43280

Distributions of host heterogeneity in susceptibility show signatures of pathogen geographic structure in an insect baculovirus Distributions of host heterogeneity in susceptibility show signatures of pathogen geographic structure in an insect baculovirus

Segregated variation between populations is a fundamental evolutionary process leading to parasite specialization, yet the resulting impacts on infection heterogeneity within populations are theoretically and empirically understudied. We asked whether the distribution of host susceptibility to infection within populations carries the signatures of geographic structure from pathogen local
Authors
Arietta E. Fleming-Davies, Savannah S. Shields, Jacob Fletcher, Wilnelia Recart, David James Páez

Climate-smart wetlands can mitigate the wetland-methane feedback loop Climate-smart wetlands can mitigate the wetland-methane feedback loop

Climate change is intensifying wetland methane emissions, reinforcing a feedback loop that accelerates warming and threatens wetlands’ role as natural climate solutions. We propose climate-smart interventions for wetland protection, restoration, and management that explicitly account for methane dynamics. Targeted interventions can weaken methane feedback while safeguarding ecological...
Authors
Irena F. Creed, Emily A. Ury, Kenneth J. Anderson, Sheel Bansal, Pascal Badiou, Victoria Dombrowik, Philip B. Duffy, Vincent Gauci, Adam Gold, Meredith A. Holgerson, Bunyod Holmatov, Lauren Kinsman-Costello, Tatiana Lobato-de Magalhães, Danielle R. Monteverde, Eric J. Ward, Zhen Zhang, Brian Buma

An integrated drought early warning system to support coldwater fisheries management An integrated drought early warning system to support coldwater fisheries management

Low streamflow resulting from drought and human water use is a threat to freshwater fisheries throughout western North America, creating a need for effective tools to aid management and fisheries use. We developed a drought early warning framework that forecasts river conditions that could result in temporary fishery closures and restrictions across Montana’s renowned trout fisheries...
Authors
Justin T. Martin, Gregory T. Pederson, Timothy Cline, Andrew Biche Lahr, Jeffrey D. Walker, David Schmetterling, Donovan A. Bell, Clint C. Muhlfeld

Disease-associated mortality drives reduction in Yukon River Chinook salmon escapement: A novel method for quantifying the negative impacts of ‘misfit’ parasites to improve fisheries management Disease-associated mortality drives reduction in Yukon River Chinook salmon escapement: A novel method for quantifying the negative impacts of ‘misfit’ parasites to improve fisheries management

Parasites can suppress host populations through parasite-induced mortality. However, the negative effects of parasites are difficult to measure in wild populations and we have few tools for quantifying the magnitude of parasite-induced mortality. This is especially true for many ‘misfit’ parasites that do not fit into standard classifications (e.g. fungal-like parasites and myxozoans)...
Authors
Mark Q. Wilber, Jayde A. Ferguson, David James Páez, Zachary W. Liller

Assessment of Chinook Salmon smolt survival at offsite release locations in the Sacramento River across wet and dry years Assessment of Chinook Salmon smolt survival at offsite release locations in the Sacramento River across wet and dry years

We used acoustic telemetry to estimate survival of tagged release groups, and quantify differences between alternative hatchery release strategies. To assess whether offsite release could increase survival of hatchery fish relative to those released at the hatchery, we compare survival during emigration of hatchery fall Chinook Salmon (FCS, Oncorhynchus tshawytscha) smolts released...
Authors
Michael J. Dodrill, Sarah Austing, Kevin Niemela, Russell W. Perry

Bright spot in eDNA monitoring: Early detection of invasive New Zealand mudsnails (Potamopyrgus antipodarum) prompted effective rapid response for fish hatchery Bright spot in eDNA monitoring: Early detection of invasive New Zealand mudsnails (Potamopyrgus antipodarum) prompted effective rapid response for fish hatchery

The New Zealand mudsnail (NZMS; Potamopyrgus antipodarum) is a widespread aquatic invasive species that is parthenogenic, requiring only a single individual to initiate an infestation. Fish hatcheries–which are critical infrastructure that raise fish to support conservation, recreation, and subsistence fisheries–frequently use local water sources to provide cool water and are especially...
Authors
Devin Slobodian, Patrick R. Hutchins, Jennifer Graves, Adam Sepulveda

Quantifying Chinook Salmon habitat across flow regimes: High resolution modeling in Oregon’s Willamette River basin Quantifying Chinook Salmon habitat across flow regimes: High resolution modeling in Oregon’s Willamette River basin

The Santiam and McKenzie River basins of western Oregon provide critical habitat for federally listed Upper Willamette River Spring Chinook salmon (Oncorhynchus tshawytscha). Streamflows in each basin are regulated in part by high-head multi-purpose dams; however, quantitative linkages between regulated streamflows and downstream habitat for juvenile and adult Chinook salmon remain...
Authors
James S. White, Karen Michelle Bartelt, Tobias J. Kock, Brandon Overstreet, Gabriel S. Hansen, J. Rose Wallick

Potential flood events in the lower Missouri River basin over multiple centuries identified using tree-ring based multi-model streamflow reconstructions Potential flood events in the lower Missouri River basin over multiple centuries identified using tree-ring based multi-model streamflow reconstructions

The Missouri River basin (MRB), the largest river basin in the United States, presents major water management challenges due to its complex topology and extensive infrastructure designed to manage high annual flows. Severe hydroclimatic events, particularly floods in 1993, 2011, and 2019, have highlighted vulnerabilities, leading the U.S. Army Corps of Engineers to enhance flood risk...
Authors
Subhrendu Gangopadhyay, Edward R. Cook, Gregory T. Pederson, Connie A. Woodhouse, Gregory J. McCabe, Matthew P. Dannenberg, Victoria M. Harris, Erika K. Wise, Jeffrey P. Niehaus, Upmanu Lall

Modeling the temperature-mediated link between demography and biomass in ectotherms Modeling the temperature-mediated link between demography and biomass in ectotherms

Population models can forecast the effects of environmental change, disturbance, and management decisions on populations of interest. Most population models focus on abundance of individuals, but biomass may be a more relevant quantity at the community or ecosystem scale, especially when investigating interaction of multiple stressors and cross-ecosystem energy flows. We developed a...
Authors
Angelika L. Kurthen, Theodore Kennedy, David A. Lytle

A genomic tool to tackle cryptic diversity demonstrates the potential for off-target use of GT-seq panels A genomic tool to tackle cryptic diversity demonstrates the potential for off-target use of GT-seq panels

A comprehensive understanding of life history is vital to successful species conservation and management. When different life history stages are accompanied by considerable morphological or cryptic variation, such as the egg and larval phases exhibited by most fishes, genomic tools are essential for identifying species so that early-life ecology questions can be studied. Genotyping-in...
Authors
Amanda Susanne Ackiss, Mark R. Vinson, Ann J. Ropp, Kristen M. Gruenthal, Trevor J. Krabbenhoft, Joseph V. Siegel, Wendylee Stott, Daniel L. Yule, Wesley A. Larson

Availability of dark daytime refuge may limit mysid abundance in the Laurentian Great Lakes Availability of dark daytime refuge may limit mysid abundance in the Laurentian Great Lakes

The zooplankton Mysis diluviana is a major component of the Laurentian Great Lakes food web and has recently declined in abundance in both lakes Michigan and Huron. Drivers of these declines are not well understood. Here, we explore the hypothesis that recent increases in water clarity have contributed to the decline of M. diluviana (mysids) by limiting the availability of daytime dark...
Authors
Kayden C. Nasworthy, James M. Watkins, Thomas M. Evans, Hannah B. Blair, Sarah D. Lawhun, Suresh A. Sethi, Timothy P. O’Brien, David M. Warner, Steven A. Pothoven, Anne E. Scofield, Peter C. Esselman, Lars G. Rudstam

Predatory impact of freshwater drum on dreissenid populations in western Lake Erie Predatory impact of freshwater drum on dreissenid populations in western Lake Erie

Impacts of dreissenid mussels (Dreissena spp.) on Great Lakes ecosystems are well documented, but the mechanisms driving variation in their abundance remain poorly understood. Dreissenid mussels have been incorporated into fish diets throughout the Great Lakes; however, studies quantifying the amount of dreissenid mussels consumed by fish predators are limited. To date, attention has...
Authors
Kevin R. Keretz, Richard Kraus, Corbin David Hilling, Joseph Schmitt
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