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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42702

Complete genome sequence of a novel aquareovirus that infects the endangered fountain darter, Etheostoma fonticola Complete genome sequence of a novel aquareovirus that infects the endangered fountain darter, Etheostoma fonticola

Here, we report the complete genome of a novel aquareovirus isolated from clinically normal fountain darters, Etheostoma fonticola, inhabiting the San Marcos River, Texas, USA. The complete genome consists of 23,958 bp consisting of 11 segments that range from 783 bp (S11) to 3,866 bp (S1).
Authors
Luke R. Iwanowicz, Deborah D. Iwanowicz, Cynthia R. Adams, Teresa D. Lewis, Thomas M. Brandt, Robert S. Cornman, Lakyn R. Sanders

Development of an adaptive harvest management program for Taiga bean geese Development of an adaptive harvest management program for Taiga bean geese

This report describes recent progress in specifying the elements of an adaptive harvest program for taiga bean goose. It describes harvest levels appropriate for first rebuilding the population of the Central Management Unit and then maintaining it near the goal specified in the AEWA International Single Species Action Plan (ISSAP). This report also provides estimates of the length of...
Authors
Fred A. Johnson, Mikko Alhainen, Anthony D. Fox, Jesper Madsen

Historical reconstructions of California wildfires vary by data source Historical reconstructions of California wildfires vary by data source

Historical data are essential for understanding how fire activity responds to different drivers. It is important that the source of data is commensurate with the spatial and temporal scale of the question addressed, but fire history databases are derived from different sources with different restrictions. In California, a frequently used fire history dataset is the State of California...
Authors
Alexandra D. Syphard, Jon E. Keeley

Status of scientific knowledge of North American sturgeon Status of scientific knowledge of North American sturgeon

Sturgeon and paddlefish were historically the dominant large fishes in all major Northern American Rivers. All ten species have been affected the past 150 years from anthropogenic stressors such that they are considered imperiled by various jurisdictions. Status papers have been presented for each species as part of a special publication on North American Acipenseriformes. The objective...
Authors
Tim J. Haxton, Kenneth J. Sulak, L. Hildebrand

The relative contributions of disease and insects in the decline of a long-lived tree: a stochastic demographic model of whitebark pine (Pinus albicaulis) The relative contributions of disease and insects in the decline of a long-lived tree: a stochastic demographic model of whitebark pine (Pinus albicaulis)

Pathogens and insect pests have become increasingly important drivers of tree mortality in forested ecosystems. Unfortunately, understanding the relative contributions of multiple mortality agents to the population decline of trees is difficult, because it requires frequent measures of tree survival, growth, and recruitment, as well as the incidence of mortality agents. We present a...
Authors
Erik S Jules, Jenell I. Jackson, Phillip J. van Mantgem, Jennifer S. Beck, Michael P. Murray, E. April Sahara

Interagency Pacific marten (Martes caurina) distribution study on the Olympic Peninsula, Washington Interagency Pacific marten (Martes caurina) distribution study on the Olympic Peninsula, Washington

The objective of this study was to determine if the Pacific marten (Martes caurina) still occurs on the Olympic Peninsula in Washington State. We reviewed recent records of marten observations on the Olympic Peninsula since 1998, and conducted new surveys in undersampled regions of the Olympic Peninsula during summer, 2016. We reviewed evidence of fisher presence from 6 previously...
Authors
Katie Moriarty, Betsy Howell, Connor Morozumi, Patti Happe, Kurt J. Jenkins, Keith B. Aubry

MODIS imagery improves pest risk assessment: A case study of wheat stem sawfly (Cephus cinctus, Hymenoptera: Cephidae) in Colorado, USA MODIS imagery improves pest risk assessment: A case study of wheat stem sawfly (Cephus cinctus, Hymenoptera: Cephidae) in Colorado, USA

Wheat stem sawfly (Cephus cinctus Norton, Hymenoptera: Cephidae) has long been a significant insect pest of spring, and more recently, winter wheat in the northern Great Plains. Wheat stem sawfly was first observed infesting winter wheat in Colorado in 2010 and, subsequently, has spread rapidly throughout wheat production regions of the state. Here, we used maximum entropy modeling...
Authors
Jordan Lestina, Maxwell Cook, Sunil Kumar, Jeffrey T. Morisette, Paul J. Ode, Frank Peirs

Surveillance for Eurasian-origin and intercontinental reassortant highly pathogenic influenza A viruses in Alaska, spring and summer 2015 Surveillance for Eurasian-origin and intercontinental reassortant highly pathogenic influenza A viruses in Alaska, spring and summer 2015

Background: Eurasian-origin and intercontinental reassortant highly pathogenic (HP) influenza A viruses (IAVs) were first detected in North America in wild, captive, and domestic birds during November–December 2014. Detections of HP viruses in wild birds in the contiguous United States and southern Canadian provinces continued into winter and spring of 2015 raising concerns that...
Authors
Andrew M. Ramey, John M. Pearce, Andrew B. Reeves, Rebecca L. Poulson, Jennifer Dobson, Brian Lefferts, Kyle A. Spragens, David E. Stallknecht

Haemosporidian parasite infections in grouse and ptarmigan: Prevalence and genetic diversity of blood parasites in resident Alaskan birds Haemosporidian parasite infections in grouse and ptarmigan: Prevalence and genetic diversity of blood parasites in resident Alaskan birds

Projections related to future climate warming indicate the potential for an increase in the distribution and prevalence of blood parasites in northern regions. However, baseline data are lacking for resident avian host species in Alaska. Grouse and ptarmigan occupy a diverse range of habitat types throughout the northern hemisphere and are among the most well-known and important native...
Authors
Matthew M. Smith, Caroline R. Van Hemert, Richard Merizon

Estimating linear temporal trends from aggregated environmental monitoring data Estimating linear temporal trends from aggregated environmental monitoring data

Trend estimates are often used as part of environmental monitoring programs. These trends inform managers (e.g., are desired species increasing or undesired species decreasing?). Data collected from environmental monitoring programs is often aggregated (i.e., averaged), which confounds sampling and process variation. State-space models allow sampling variation and process variations to...
Authors
Richard A. Erickson, Brian R. Gray, Eric A. Eager

Habitat selection by Forster's Terns (Sterna forsteri) at multiple spatial scales in an urbanized estuary: The importance of salt ponds Habitat selection by Forster's Terns (Sterna forsteri) at multiple spatial scales in an urbanized estuary: The importance of salt ponds

The highly urbanized San Francisco Bay Estuary, California, USA, is currently undergoing large-scale habitat restoration, and several thousand hectares of former salt evaporation ponds are being converted to tidal marsh. To identify potential effects of this habitat restoration on breeding waterbirds, habitat selection of radiotagged Forster's Terns (Sterna forsteri) was examined at...
Authors
Jill Bluso-Demers, Joshua T. Ackerman, John Y. Takekawa, Sarah H. Peterson
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