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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42702

Clustering and unconstrained ordination with Dirichlet process mixture models Clustering and unconstrained ordination with Dirichlet process mixture models

Assessment of similarity in species composition or abundance across sampled locations is a common goal in multi-species monitoring programs. Existing ordination techniques provide a framework for clustering sample locations based on species composition by projecting high-dimensional community data into a low-dimensional, latent ecological gradient representing species composition...
Authors
Christian Stratton, Andrew Hoegh, Thomas Rodhouse, Jennifer L. Green, Katharine M. Banner, Kathryn Irvine

Environmental drivers and spatial patterns of antibiotic-resistant, enteric coliforms across a forest–urban riverscape Environmental drivers and spatial patterns of antibiotic-resistant, enteric coliforms across a forest–urban riverscape

Antibiotic resistant bacteria are prevalent environmental contaminants in freshwaters, and antibiotic resistance genes circulate throughout the urban water cycle. The increase of antibiotic resistant pathogens threatens public health through direct and indirect exposure, and natural resource managers need information on the spatial patterns of antibiotic resistant bacteria and...
Authors
Angela M Klock, Christian E. Torgersen, Marilyn C Roberts, Daniel J Vogt, Kristiina A Vogt

Asynchronous movement patterns between breeding and stopover locations in a long-distance migratory songbird Asynchronous movement patterns between breeding and stopover locations in a long-distance migratory songbird

The species-specific migratory patterns and strategies of many songbirds remain unknown or understudied, as research in animal ecology is biased toward the breeding period, with the fewest studies on the migratory period across taxa. Identifying large-scale spatiotemporal migratory patterns is challenging, as individuals within a species may vary in their migratory behavior and...
Authors
Theodore J. Zenzal, Andrea Contina, Hannah B. Vander Zanden, Leanne K. Kuwahara, Daniel C. Allen, Kristen M. Covino

Annual migratory movement, apparent molt-migration, migration schedule, and diffuse migratory connectivity of Hermit Warblers Annual migratory movement, apparent molt-migration, migration schedule, and diffuse migratory connectivity of Hermit Warblers

Quantifying migratory connectivity and annual movement is key to sound conservation planning for migratory species. Hermit Warblers (Setophaga occidentalis) are an endemic-breeding species in the Pacific Northwest that winters in Mexico and the Central Americas. This species faces threats from mature forest loss and climate change throughout its range, but we know little about its...
Authors
Hankyu Kim, Rodney Siegel, Jaime L Stephens, Joan Hagar, Brett Furnas, Min-Su Jeong, Brenda C McComb, Matthew G. Betts

Synthesizing professional opinion of Lake Whitefish and Cisco recruitment drivers across the Great Lakes Synthesizing professional opinion of Lake Whitefish and Cisco recruitment drivers across the Great Lakes

Disentangling the suite of ecological drivers that explain recruitment variability for Lake Whitefish Coregonus clupeaformis and Cisco C. artedi is of critical importance for their conservation, management, and stewardship in the Laurentian Great Lakes. However, recruitment is inherently variable and can be regulated by many interacting processes, the relative importance of which can...
Authors
Taylor A. Brown, Lars G. Rudstam, Suresh A. Sethi, Chris Hessell, Erik Olsen, Jory L. Jonas, Benjamin J. Rook, Steven A. Pothoven, Sarah J.H. Beech, Erin S. Dunlop, Stephen James, Jason B. Smith, Zach Amidon, Dray D. Carl, David Bunnell, Ralph W. Tingley, Brian Weidel, Andrew Edgar Honsey

Incorporating climate data into emergency planning and exercises: A primer for emergency management practioners and data developers Incorporating climate data into emergency planning and exercises: A primer for emergency management practioners and data developers

Climate change has and will continue to sharpen climate-related risks to communities and natural resources in California and elsewhere, as the probabilities of more extreme weather, floods, and fires continue to increase. This poses a problem of novel situations for emergency management. Progress has been made in terms of formally incorporating climate projections, data, and research on...
Authors
Christine M. Albano, Maureen I. McCarthy, Stephanie Anne Mcafee, Anne Wein, Michael D. Dettinger

Living with wildfire in Lake Wenatchee, Chelan County, Washington: 2022 Data report Living with wildfire in Lake Wenatchee, Chelan County, Washington: 2022 Data report

Community wildfire readiness includes actions taken by residents, including wildfire risk mitigation at the parcel level and evacuation preparedness. This report presents results from two data collection efforts in the Lake Wenatchee Fire & Rescue service district in Chelan County, Washington: parcel level rapid wildfire risk assessments and household surveys sent to the owners of...
Authors
Julia Goolsby, Patricia A. Champ, Suzanne Wittenbrink, Colleen Donovan, Kris King, Hannah Brenkert-Smith, James Meldrum, Christopher M. Barth, Carolyn Wagner, Chiara Forrester

Larval coregonine density and diet composition along beaches of northern Lake Michigan Larval coregonine density and diet composition along beaches of northern Lake Michigan

Recent oligotrophication in Lake Michigan has contributed to reduced biomass of spring zooplankton and a shift in the zooplankton assemblage toward more calanoid copepods. These changes have likely altered prey availability for first feeding native fish species that hatch in early spring, including coregonines. While spring zooplankton density and community composition are routinely...
Authors
Marissa Cubbage, Tomas O. Hook, David Bunnell, Patricia Dieter, Amanda Susanne Ackiss, Paris D. Collingsworth

Bottom trawl assessment of Lake Ontario's benthic preyfish community, 2023 Bottom trawl assessment of Lake Ontario's benthic preyfish community, 2023

Since 1978, surveys of Lake Ontario preyfish communities have provided information on the status and trends of the benthic preyfish community related to Fish Community Objectives that includes understanding preyfish population dynamics and community diversity. Beginning in 2015, the benthic preyfish survey expanded from US-only to incorporate Canadian sites, increasing the survey’s...
Authors
Brian O’Malley, Scott P. Minihkeim, Olivia Margaret Mitchinson, Scott David Stahl, Jessica A Goretzke, Jeremy P. Holden

Boom and bust: The effects of masting on seed predator range dynamics and trophic cascades Boom and bust: The effects of masting on seed predator range dynamics and trophic cascades

AimSpatiotemporal variation in resource availability is a strong driver of animal distributions. In the northern hardwood and boreal forests of the northeastern United States, tree mast events provide resource pulses that drive the population dynamics of small mammals, including the American red squirrel (Tamiasciurus hudsonicus), a primary songbird nest predator. This study sought to...
Authors
Michael T. Hallworth, Alexej Sirén, William DeLuca, Timothy Duclos, Kent P. McFarland, Jason M. Hill, Christopher C. Rimmer, Toni Lyn Morelli

Identifying transportation data and system needs for a Federal lands transportation data platform Identifying transportation data and system needs for a Federal lands transportation data platform

Executive Summary Modern transportation and land-use planning efforts include information from many sources to address topics such as safety, efficiency, commercial, and social needs. This wide breadth of topics provides opportunities for collaboration and development of common tools for diverse users. In many cases, different information systems provide the spatial data and geographic...
Authors
Daniel Manier, Nicholas Grisham, Amit Armstrong, Elijah Henley, Jason Doolittle, Richard D. Inman

Wildfires influence mercury transport, methylation, and bioaccumulation in headwater streams of the Pacific Northwest Wildfires influence mercury transport, methylation, and bioaccumulation in headwater streams of the Pacific Northwest

The increasing frequency and severity of wildfires are among the most visible impacts of climate change. However, the effects of wildfires on mercury (Hg) transformations and bioaccumulation in stream ecosystems are poorly understood. We sampled soils, water, sediment, in-stream leaf litter, periphyton, and aquatic invertebrates in 36 burned (one-year post fire) and 21 reference...
Authors
Austin K. Baldwin, James Willacker, Branden L. Johnson, Sarah E. Janssen, Collin A. Eagles-Smith
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