Publications

Consumptive use of freshwater is of concern in many estuarine ecosystems, and various frameworks have been used to prescribe environmental flows to benefit native species. However, few of these frameworks explicitly examine the potential trade-offs between socioeconomic and conservation-oriented values. This is exemplified in California, USA, where freshwater management has been an area...

Managing ecosystems in an era of rapid change is inherently challenging not only because of uncertainty in future climate but also due to diverse responses of ecosystems to climate. Projections of ecological transformation alongside information about plausible vegetation trajectories can help land managers explore divergent scenarios and consider how modeled outcomes match their...

The San Francisco Bay supports thousands of breeding waterbirds annually and hosts large populations of American avocets (Recurvirostra americana), black-necked stilts (Himantopus mexicanus), and Forster’s terns (Sterna forsteri). These three species have relied largely on former commercial salt ponds in south San Francisco Bay, which provide wetland foraging habitat and island nesting...

Understanding how climatic variables impact host-pathogen relationships in temperature-sensitive ectothermic host organisms is crucial under global change. Few studies have explored how temperature gradients generate inter-individual variation in epidemiological traits like host susceptibility or pathogen replication. Here, we develop a mathematical model to explore a novel hypothesis...

Removal sampling is an important method for estimating abundance, but nearly all removal models assume closure during sampling. Yet, closure may be difficult to assume, evaluate, or enforce in many settings. To address situations where populations are geographically open between each removal sample, we incorporated a Markovian availability process into an N-mixture model framework. This...

The average host susceptibility decreases as the epizootic progresses because easily infected hosts are first removed from the population. While host susceptibility is pathogen-specific, it is likely that host susceptibility is correlated between different pathogens, so that co-circulating pathogens may have reciprocal impacts on their epidemics. However, despite well-documented examples...

Objective Energetic reserves are important indicators of the relative health of fish and fish populations. Body condition indices that relate fish weight to length are commonly used as quick, noninvasive methods for approximating lipid content and condition. A microwave meter (i.e., fat meter or energy meter) is a noninvasive method found to be more accurate in some species. The...

Juvenile salmonid mortality due to infectious haematopoietic necrosis virus (IHNV) can be a major burden on fish hatcheries. We consider possible IHNV transmission routes and specialist–generalist patterns across three regions in the Pacific Northwest of North America: Coastal Washington and Oregon (CWO), Lower Columbia River Basin (LCRB) and Snake River Basin (SRB) to obtain multi...

Marine diseases can have far-reaching effects on population, community and ecosystem health; however, our ability to track, predict and manage these diseases has, historically, been poor. As a result, the fields of disease ecology and epidemiology have developed at a slower pace for marine than terrestrial systems [1]. New methodologies, including genomic tools for diagnostics [2,3]

In arid and semi-arid regions, groundwater sustains vegetation through subsurface water access, yet the responses of groundwater-dependent ecosystems (GDEs) to changing hydroclimate and groundwater availability are relatively understudied. This study investigates seasonal and spatial patterns in vegetation greenness using Landsat Enhanced Vegetation Index (EVI) values across riparian and...

Large magnitude snow avalanches (destructive size ≥ D3) impact settlements, transportation corridors, and public safety worldwide. In Colorado, United States, avalanches have killed more people than any other natural hazard since 1950. In March 2019, a large magnitude avalanche cycle occurred throughout the entire mountainous portion of Colorado resulting in more than 1000 reported...

Executive Summary Oncorhynchus tshawytscha (Walbaum in Artedi, 1792; Chinook salmon) were historically abundant in the McCloud River but are now extirpated from this tributary owing to dam construction and lack of passage. Planning efforts to restore populations above Shasta and Keswick Dams are currently underway, including an evaluation of potential source populations. One potential...