Publications
This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.
Filter Total Items: 42922
An experimental comparison of composite and grab sampling of stream water for metagenetic analysis of environmental DNA An experimental comparison of composite and grab sampling of stream water for metagenetic analysis of environmental DNA
Use of environmental DNA (eDNA) to assess distributions of aquatic and semi-aquatic macroorganisms is promising, but sampling schemes may need to be tailored to specific objectives. Given the potentially high variance in aquatic eDNA among replicate grab samples, compositing smaller water volumes collected over a period of time may be more effective for some applications. In this study...
Authors
Robert S. Cornman, James E. McKenna, Jennifer A. Fike, Sara J. Oyler-McCance, Robin Johnson
Waterfowl spring migratory behavior and avian influenza transmission risk in the changing landscape of the East Asian-Australasian Flyway Waterfowl spring migratory behavior and avian influenza transmission risk in the changing landscape of the East Asian-Australasian Flyway
Avian influenza has advanced from a regional concern to a global health issue with significant economic, trade, and public health implications. Wild birds, particularly waterfowl (Anseriformes), are known reservoirs for low-pathogenic avian influenza viruses (AIV) and recent studies have shown their potential in the spread of highly pathogenic forms of virus. East Asia remains an...
Authors
Jeffery D. Sullivan, John Y. Takekawa, Kyle A. Spragens, Scott H. Newman, Xiangming Xiao, Paul J. Leader, Bena Smith, Diann J. Prosser
Cyanobacteria reduce motility of quagga mussel (Driessena rostriformis bugensis) sperm Cyanobacteria reduce motility of quagga mussel (Driessena rostriformis bugensis) sperm
The temporal expansion of harmful algal blooms, primarily associated with cyanobacteria, may impact aquatic organisms at vulnerable life history stages. Broadcast spawning species release gametes into the water column for external fertilization, directly exposing sperm to potential aquatic stressors. To determine if cyanobacteria can disrupt reproduction in freshwater broadcast spawners...
Authors
Anna G. Boegehold, Karim Alame, Nicholas S. Johnson, Donna R. Kashian
Rising tides: Assessing habitat vulnerability for an endangered salt marsh-dependent species with sea-level rise Rising tides: Assessing habitat vulnerability for an endangered salt marsh-dependent species with sea-level rise
Salt marsh-dependent species are vulnerable to impacts of sea-level rise (SLR). Site-specific differences in ecogeomorphic processes result in different SLR vulnerabilities. SLR impacts to Ridgway’s rail (Rallus obsoletus) of Southern California (SC) and San Francisco Bay (SF), U.S.A. could foreshadow SLR effects on other coastal endemic species. Salt marsh vulnerabilities to SLR were...
Authors
Jordan A. Rosencranz, Karen M. Thorne, Kevin J. Buffington, Cory T. Overton, John Takekawa, Michael L. Casazza, Jennifer McBroom, Julian K. Wood, Nadav Nur, Richard L. Zembal, Glen M. MacDonald, Richard F. Ambrose
Twenty-nine years of population dynamics in a small-bodied montane amphibian Twenty-nine years of population dynamics in a small-bodied montane amphibian
Identifying population declines before they reach crisis proportions is imperative given the current global decline in vertebrate fauna and associated challenges and expense of recovery. Understanding life histories and how the environment influences demography are critical aspects of this challenge, as is determining the biological relevance of covariates that are best supported by the...
Authors
Erin L. Muths, R D Scherer, S M Amburgey, PS Corn
Status and Trends in the Lake Superior Fish Community, 2017 Status and Trends in the Lake Superior Fish Community, 2017
In 2017, the Lake Superior fish community was sampled with daytime bottom trawls at 76 nearshore and 36 offshore stations. Spring nearshore and summer offshore water temperatures in 2017 were similar to slightly cooler than the 1991-2017 average. In the nearshore zone, a total of 28,902 individual fish from 27 species or morphotypes were collected. The number of species collected at each...
Authors
Mark R. Vinson, Lori M. Evrard, Owen T. Gorman, Daniel Yule
Long-term streamflow trends in Hawai‘i and implications for native stream fauna Long-term streamflow trends in Hawai‘i and implications for native stream fauna
Climate change has fundamentally altered the water cycle in tropical islands, which is a critical driver of freshwater ecosystems. To examine how changes in streamflow regime have impacted habitat quality for native migratory aquatic species, we present a 50‐year (1967–2016) analysis of hydrologic records in 23 unregulated streams across the five largest Hawaiian Islands. For each stream...
Authors
H. M. Clilverd, Y.-P. Tsang, D. M. Infante, Abigail Lynch, A. M. Strauch
Prairie reconstruction unpredictability and complexity: What is the rate of reconstruction failures? Prairie reconstruction unpredictability and complexity: What is the rate of reconstruction failures?
The outcomes of prairie reconstructions are subject to both unpredictability and complexity. Prairie, tallgrass, and mixed grass reconstruction is defined as the planting of a native herbaceous seed mixture composed of multiple prairie species (10 or more) in an area where the land has been heavily cultivated or anthropogenically disturbed. Because of the unpredictability and complexity...
Authors
Jack E. Norland, Cami S. Dixon, Diane L. Larson, Kristine L. Askerooth, Benjamin A. Geaumont
Resolving the status of the genera Gastrophysus and Geneion in the family Tetraodontidae (Teleostei: Tetraodontiformes) Resolving the status of the genera Gastrophysus and Geneion in the family Tetraodontidae (Teleostei: Tetraodontiformes)
Maintaining a current list of valid names and taxonomy for biodiversity is an ever-increasing challenge for the Integrated Taxonomic Information System (ITIS 2017). Advances in molecular techniques and the discovery of many cryptic taxa have dramatically increased the number of species and resulted in revised interpretation of phylogenetic relationships. Occasionally it is necessary to...
Authors
Howard L. Jelks
Post‐release predation mortality of age‐0 hatchery‐reared Chinook salmon from non‐native smallmouth bass in the Snake River Post‐release predation mortality of age‐0 hatchery‐reared Chinook salmon from non‐native smallmouth bass in the Snake River
Release of age‐0 hatchery‐reared fall Chinook salmon, Oncorhynchus tshawytscha(Walbaum), in the Snake River resulted in up to 30‐fold increases in salmon consumption by non‐native smallmouth bass, Micropterus dolomieu Lacepѐde. In an upper river reach, smallmouth bass fed intensively during a release in May, but Chinook salmon consumption returned to pre‐release levels within 1–2 days as...
Authors
John M. Erhardt, Kenneth F. Tiffan
A diverse suite of pharmaceuticals contaminates stream and riparian food webs A diverse suite of pharmaceuticals contaminates stream and riparian food webs
A multitude of biologically active pharmaceuticals contaminate surface waters globally, yet their presence in aquatic food webs remain largely unknown. Here, we show that over 60 pharmaceutical compounds can be detected in aquatic invertebrates and riparian spiders in six streams near Melbourne, Australia. Similar concentrations in aquatic invertebrate larvae and riparian predators...
Authors
Erinn K. Richmond, Emma J. Rosi, David M. Walters, Jerker Fikk, Stephen K. Hamilton, Tomas Brodin, Anna Sundelin, Michael R. Grace
Prevalence and risk factors of Trichomonas gallinae and trichomonosis in golden eagle (Aquila chrysaetos) nestlings in western North America Prevalence and risk factors of Trichomonas gallinae and trichomonosis in golden eagle (Aquila chrysaetos) nestlings in western North America
Avian trichomonosis, caused by the protozoan Trichomonas gallinae, affects bird-eating raptors worldwide. Raptors can develop trichomonosis by feeding on infected prey, particularly Rock Pigeons (Columba livia), which are a reservoir for T. gallinae. Raptors may be particularly vulnerable to T. gallinae infection in degraded habitats, where changes in resources may cause raptors to...
Authors
Benjamin M Dudek, Michael N. Kochert, Joseph G. Barnes, Peter H. Bloom, Joseph M. Papp, Richard W. Gerhold, Kathryn E. Purple, Kenneth V. Jacobson, Charles R. Preston, Chris R. Vennum, James W. Watson, Julie A. Heath