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Transcriptomics as an early warning of domoic acid exposure in Pacific razor clams (Siliqua patula) Transcriptomics as an early warning of domoic acid exposure in Pacific razor clams (Siliqua patula)
As oceans warm, harmful algal blooms (HABs) are expected to increase, including blooms of Pseudo-nitzschia, a diatom that produces domoic acid (DA), which is a potent neurotoxin. Regulatory limits for human consumption (0.075–0.1 mg/kg/day; acute exposure) exist for the Pacific razor clam; however, fisheries currently do not have regulatory limits for chronic low-level exposure to DA...
Authors
Lizabeth Bowen, Shannon C. Waters-Dynes, Brenda Ballachey, Heather Coletti, Zachary Forster, Ji Li, Bradley Jenner
Multi-Scale Graph Learning for anti-sparse downscaling Multi-Scale Graph Learning for anti-sparse downscaling
Water temperature can vary substantially even across short distances within the same sub-watershed. Accurate prediction of stream water temperature at fine spatial resolutions (i.e., fine scales, ≤ 1 km) enables precise interventions to maintain water quality and protect aquatic habitats. Although spatiotemporal models have made substantial progress in spatially coarse time series...
Authors
Yingda Fan, Runlong Yu, Janet R. Barclay, Alison P. Appling, Yiming Sun, Yiqun Xie, Xiaowei Jia
Detection of Giardia and Cryptosporidium in surface water of a subarctic city Detection of Giardia and Cryptosporidium in surface water of a subarctic city
Giardia and Cryptosporidium spp. are globally distributed protozoan parasites that can cause gastrointestinal disease in humans and animals. These zoonotic parasites and their ecological relationships have been understudied in Alaska and elsewhere, despite being identified as priority zoonotic pathogens. We aimed to detect and characterize Giardia and Cryptosporidium spp. in waterbodies...
Authors
Christina A. Ahlstrom, Michael P. Carey, Damian M. Menning, Jonathan A. O’Donnell, Andrew M. Ramey
Development of a genotyping-in-thousands by sequencing (GT-seq) panel for identifying individuals and estimating relatedness among Alaska black bears (Ursus americanus) Development of a genotyping-in-thousands by sequencing (GT-seq) panel for identifying individuals and estimating relatedness among Alaska black bears (Ursus americanus)
The management and conservation of large mammals, such as black bears (Ursus americanus), have long been informed by genetic estimates of population size and individual dispersal. Amplicon sequencing methods, also known as ‘genotyping-in-thousands-by sequencing’ (GT-seq), now enable the efficient and cost-effective genotyping of hundreds of loci and individuals in the same sequencing run...
Authors
Eleni Leto Petrou, Colette D. Brandt, Timothy J. Spivey, Kristen M. Gruenthal, Cherie Marie Mckeeman, Sean D. Farley, David Battle, Cory Stantorf, Andrew M. Ramey
Physics-guided fair graph sampling for water temperature prediction in river networks Physics-guided fair graph sampling for water temperature prediction in river networks
This work introduces a novel graph neural networks (GNNs)-based method to predict stream water temperature and reduce model bias across locations of different income and education levels. Traditional physics-based models often have limited accuracy because they are necessarily approximations of reality. Recently, there has been an increasing interest of using GNNs in modeling complex...
Authors
Erhu He, Declan Kutscher, Yiqun Xie, Jacob Aaron Zwart, Zhe Jiang, Huaxiu Yao, Xiaowei Jia
Managing for tomorrow—A climate adaptation decision framework Managing for tomorrow—A climate adaptation decision framework
Climate change presents new and compounding challenges to natural resource management. With changing climate patterns, managers are confronted with difficult decisions on how to minimize climate effects on habitats, infrastructure, and wildlife populations. To support climate adaptation decision making, we first conceptualized an approach that integrates the principles of the resist...
Authors
Kristen L. Bouska, Joshua Booker, Susan C. Clark, John T. Delaney, Josh D. Eash, Max Post van der Burg, Heidi Roop
Benthic habitat map of Olowalu Reef, Maui, Hawaii—Geomorphological structure, biological cover, and geologic zonation determined with spectral, lidar, and acoustic data Benthic habitat map of Olowalu Reef, Maui, Hawaii—Geomorphological structure, biological cover, and geologic zonation determined with spectral, lidar, and acoustic data
The fringing coral reef off Olowalu, Maui, Hawaii, has been identified as a local conservation priority site. In 2007, the National Oceanic and Atmospheric Administration (NOAA) produced a benthic habitat map of the Hawaiian Islands that was used as a foundation for this study. To support place-based management of the reef in the future, the U.S. Geological Survey (USGS) mapped the...
Authors
Liana N. Heberer, Kristen C. Alkins, Curt D. Storlazzi, Susan A. Cochran, Ann E. Gibbs, Russell Sparks, Kristy Stone, Itana Silva, Tatiana Martinez, Cole Peralto, Arielle S. Levine, Douglas A. Stow, Jillian Maloney
Ten quick tips to get you started with Bayesian statistics Ten quick tips to get you started with Bayesian statistics
No abstract available.
Authors
Olivier Gimenez, J. Andrew Royle, Marc Kéry, Chloé Nater
Behavioral responses of Silver Carp to underwater acoustic deterrent sounds Behavioral responses of Silver Carp to underwater acoustic deterrent sounds
Objective Invasive carps continue to spread across the Mississippi River basin, posing significant ecological risk. Identifying technologies to slow their dispersal is critical. The use of sound has been proposed as a method to modify the behavior of Silver Carp Hypophthalmichthys molitrix, offering a nonstructural deterrent strategy.Methods Silver Carp implanted with acoustic...
Authors
Jacob Faulkner, James J. Wamboldt, Katelyn M. Lawson, John Plumb, Christa M. Woodley, Jessica C. Stanton, Matthew D. Sholtis, Nicholas M Swyers, Mark Roth, Aaron C. Urbanczyk, Robin D. Calfee, Marybeth K. Brey
Insect pollinator crossing of international border barriers along the U.S.-Mexico border Insect pollinator crossing of international border barriers along the U.S.-Mexico border
Infrastructure along the U.S.-Mexico Border may not be equally permeable to all types of insect pollinators with potential implications for pollen and gene flow between plant populations. Pollinators were observed on their approach to two types of border barriers (slatted and cemented) along the U.S.-Mexico Border from March 2023 to January 2024. Near the barrier, four insect behaviors...
Authors
Beth A. Middleton
Identifying preferential flow from soil moisture time series: Review of methodologies Identifying preferential flow from soil moisture time series: Review of methodologies
Identifying and quantifying preferential flow (PF) through soil—the rapid movement of water through spatially-distinct pathways in the subsurface—is vital to understanding how the hydrologic cycle responds to climate, land cover, and anthropogenic changes. In recent decades, methods have been developed that use measured soil moisture time series to identify PF. Because they allow for...
Authors
John R. Nimmo, Inge Wiekenkamp, Ryoko Araki, Jannis Groh, Nitin Singh, Octavia Crompton, Briana Wyatt, Hoori Ajami, Daniel Gimenez, Daniel Hirmas, Pamela L. Sullivan, Matthias Sprenger
Seasonal stratification drives bioaccumulation of pelagic mercury sources in eutrophic lakes Seasonal stratification drives bioaccumulation of pelagic mercury sources in eutrophic lakes
Increased lake eutrophication, influenced by changing climate and land use, alters aquatic cycling and bioaccumulation of mercury (Hg). Additionally, seasonally dynamic lake circulation and plankton community composition can confound our ability to predict changes in biological Hg concentrations and sources. To assess temporal variation, we examined seasonal total Hg (THg) and...
Authors
Grace Jane Armstrong, Sarah Elizabeth Janssen, Ryan F. Lepak, Tylor Rosera, Benjamin D. Peterson, Samia T. Cushing, Michael Tate, James W. Hurley