Publications
Browse more than 160,000 publications authored by our scientists over the past 100+ year history of the USGS. Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more.
Mission Area Publications
Mission Area Publications
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Filter Total Items: 175334
Heavy: Software for forward-modeling gravity change from MODFLOW output Heavy: Software for forward-modeling gravity change from MODFLOW output
Fortran software, named Heavy, was developed to simulate gravity change due to water-storage change in MODFLOW groundwater models. Heavy is compatible with MODFLOW-2005 and MODFLOW-NWT models using the layer-property flow or upstream weighting packages. All of the necessary information for the gravity calculation—the geometry of the model cells, the storage coefficient, and head change...
Authors
Jeffrey R. Kennedy, Joshua Larsen
Conspecific density and habitat quality affect breeding habitat selection: Support for the social attraction hypothesis Conspecific density and habitat quality affect breeding habitat selection: Support for the social attraction hypothesis
Breeding habitat selection is a critical component of the annual cycle because of its effect on fitness. Multiple theories of habitat selection can be differentiated by their responses to the quantity of habitat, conspecific density, and habitat quality. Here, we use network analysis to understand the characteristics of fine-scale breeding habitat selected by both immigrant and returning...
Authors
Rose J. Swift, Michael J. Anteau, Kristen S. Ellis, Megan M. Ring, Mark H. Sherfy, Dustin L. Toy
Biting midges (Diptera: Ceratopogonidae) as putative vectors of zoonotic Onchocerca lupi (Nematoda: Onchocercidae) in northern Arizona and New Mexico, southwestern United States Biting midges (Diptera: Ceratopogonidae) as putative vectors of zoonotic Onchocerca lupi (Nematoda: Onchocercidae) in northern Arizona and New Mexico, southwestern United States
Onchocerca lupi (Rodonaja, 1967) is an understudied, vector-borne, filarioid nematode that causes ocular onchocercosis in dogs, cats, coyotes, wolves, and is also capable of infecting humans. Onchocercosis in dogs has been reported with increasing incidence worldwide. However, despite the growing number of reports describing canine O. lupi cases as well as zoonotic infections globally...
Authors
Chandler C. Roe, Olivia Holiday, Kelly Upshaw-Bia, Gaven Benally, Charles H.D. Williamson, Jennifer Urbanz, Guilherme G. Verocai, Chase Ridenour, Roxanne Nottingham, Morgan Ford, Derek Lake, Theodore Kennedy, Crystal Hepp, Jason W. Sahl
Environmental antimicrobial resistance gene detection from wild bird habitats using two methods: A commercially available culture-independent qPCR assay and culture of indicator bacteria followed by whole-genome sequencing Environmental antimicrobial resistance gene detection from wild bird habitats using two methods: A commercially available culture-independent qPCR assay and culture of indicator bacteria followed by whole-genome sequencing
Objectives A variety of methods have been developed to detect antimicrobial resistance (AMR) in different environments to better understand the evolution and dissemination of this public health threat. Comparisons of results generated using different AMR detection methods, such as quantitative PCR (qPCR) and whole-genome sequencing (WGS), are often imperfect, and few studies have...
Authors
Christina Ahlstrom, Laura Celeste Scott, Hanna Woksepp, Jonas Bonnedahl, Andrew M. Ramey
Future climate-induced changes in mixing and deep oxygen content of a caldera lake with hydrothermal heat and salt inputs Future climate-induced changes in mixing and deep oxygen content of a caldera lake with hydrothermal heat and salt inputs
Vertical profiles of temperature, salinity and dissolved oxygen in Crater Lake, a caldera lake in the Oregon Cascade Range that receives hydrothermal inputs of heat and salt, were simulated with a 1-dimensional model. Twelve Global Circulation Models and two Representative Concentration Pathways (RCPs) were used to develop boundary conditions from 1950 to 2099. The model simulated the...
Authors
Tamara M. Wood, Susan Wherry, Sebastiano Piccolroaz, Scott F Girdner
Spatial and temporal variability in summertime dissolved carbon dioxide and methane in temperate ponds and shallow lakes Spatial and temporal variability in summertime dissolved carbon dioxide and methane in temperate ponds and shallow lakes
Small waterbodies have potentially high greenhouse gas emissions relative to their small footprint on the landscape, although there is high uncertainty in model estimates. Scaling their carbon dioxide (CO2) and methane (CH4) exchange with the atmosphere remains challenging due to an incomplete understanding and characterization of spatial and temporal variability in CO2 and CH4. Here, we...
Authors
Nicholas E. Ray, Meredith Holgerson, Mikkel Rene Andersen, Janis Bikse, Lauren E Bortolotti, Martyn N. Futter, Ilga Kokorite, Alan Law, Cory P. McDonald, Jorrit Mesman, Mike Peacock, David Richardson, Julien Arsenault, Sheel Bansal, Kaelin M Cawley, Kerri Finlay, McKenzie A. Kuhn, Amir Reza Shahabinia, Facundo Smufer
Policy comparison of lead hunting ammunition bans and voluntary nonlead programs for California condors Policy comparison of lead hunting ammunition bans and voluntary nonlead programs for California condors
The endangered California condor (Gymnogyps californianus) is negatively affected by lead poisoning from spent lead-based hunting ammunition. Because lead poisoning is the primary mortality factor affecting condors, the California Fish and Game Commission banned lead hunting ammunition during 2008 in the southern California condor range followed by a statewide ban implemented in 2019. In...
Authors
John H. Schulz, Samantha Totoni, Sonja A. Wilhelm Stanis, Christine Jie Li, Mark Morgan, Damon M. Hall, Elisabeth B. Webb, Robin M. Rotman
Exchange of carbapenem-resistant Escherichia coli Sequence Type 38 intercontinentally and among wild bird, human, and environmental niches Exchange of carbapenem-resistant Escherichia coli Sequence Type 38 intercontinentally and among wild bird, human, and environmental niches
Carbapenem-resistant Enterobacteriaceae (CRE) are a global threat to human health and are increasingly being isolated from nonclinical settings. OXA-48-producing Escherichia coli sequence type 38 (ST38) is the most frequently reported CRE type in wild birds and has been detected in gulls or storks in North America, Europe, Asia, and Africa. The epidemiology and evolution of CRE in...
Authors
Christina Ahlstrom, Hanna Woksepp, Linus Sandegren, Andrew M. Ramey, Jonas Bonnedahl
Range-wide population trend analysis for greater sage-grouse (Centrocercus urophasianus)—Updated 1960–2022 Range-wide population trend analysis for greater sage-grouse (Centrocercus urophasianus)—Updated 1960–2022
Greater sage-grouse (Centrocercus urophasianus) are at the center of state and national land-use policies largely because of their unique life-history traits as an ecological indicator for health of sagebrush ecosystems. This updated population trend analysis provides state and federal land and wildlife managers with best-available science to help guide current management and...
Authors
Peter S. Coates, Brian G. Prochazka, Cameron L. Aldridge, Michael S. O’Donnell, David R. Edmunds, Adrian P. Monroe, Steve E. Hanser, Lief A. Wiechman, Michael P. Chenaille
Bioaccumulation kinetics of model pharmaceuticals in the freshwater unionid pondmussel, Sagittunio subrostratus Bioaccumulation kinetics of model pharmaceuticals in the freshwater unionid pondmussel, Sagittunio subrostratus
Bioaccumulation of ionizable pharmaceuticals has been increasingly studied, with most reported aquatic tissue concentrations in field or laboratory experiments being from fish. However, higher levels of antidepressants have been observed in bivalves compared with fish from effluent-dominated and dependent surface waters. Such observations may be important for biodiversity because...
Authors
S. Rebekah Burket, Jaylen L. Sims, Rebecca A. Dorman, Nile E. Kemble, Eric Brunson, Jeffery A. Steevens, Bryan W. Brooks
Supervised versus unsupervised approaches to classification of accelerometry data Supervised versus unsupervised approaches to classification of accelerometry data
Sophisticated animal-borne sensor systems are increasingly providing novel insight into how animals behave and move. Despite their widespread use in ecology, the diversity and expanding quality and quantity of data they produce have created a need for robust analytical methods for biological interpretation. Machine learning tools are often used to meet this need. However, their relative
Authors
Maitreyi Sur, Jonathan C. Hall, Joseph Brandt, Molly Astell, Sharon A. Poessel, Todd E. Katzner
Measuring basin-scale aquifer storage change and mapping specific yield in Albuquerque, New Mexico, USA, with repeat microgravity data Measuring basin-scale aquifer storage change and mapping specific yield in Albuquerque, New Mexico, USA, with repeat microgravity data
Study Region The groundwater basin underlying the City of Albuquerque, New Mexico, USA. Study Focus The study focuses on changes in groundwater storage and how those changes relate to groundwater-level changes. Groundwater storage change was measured using repeat microgravity at 35 stations from 2016 to 2021. Usually, storage is monitored by converting groundwater-level changes to...
Authors
Jeffrey R. Kennedy, Meghan T. Bell