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Publications

Browse more than 160,000 publications authored by our scientists over the past 100+ year history of the USGS.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more.

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Effects of dam-induced delays on system-wide survival of Atlantic salmon smolts during high-flow, high-survival years in the Penobscot River, Maine, USA Effects of dam-induced delays on system-wide survival of Atlantic salmon smolts during high-flow, high-survival years in the Penobscot River, Maine, USA

System-wide survival of hatchery-reared Atlantic salmon (Salmo salar) smolts was evaluated (2017–2019) in the Penobscot River and compared to survival estimates from previous years that spanned major changes (2005–2016). This system was transformed through two dam removals in 2012 and construction of a nature-like passage structure at a third. The main stem had three dams (five prior to...
Authors
Alejandro Molina-Moctezuma, Daniel S. Stich, Joseph D. Zydlewski

The effect of scent lures on detection is not equitable among sympatric species The effect of scent lures on detection is not equitable among sympatric species

Context: Camera trapping is an effective tool for cost-efficient monitoring of species over large temporal and spatial scales and it is becoming an increasingly popular method for investigating wildlife communities and trophic interactions. However, camera trapping targeting rare and elusive species can be hampered by low detection rates, which can decrease the accuracy and precision of...
Authors
Marlin M. Dart, Lora B. Perkins, Jonathan A. Jenks, Gary Hatfield, Robert Charles Lonsinger

Apophis specific action team report Apophis specific action team report

This report about Asteroid (99942) Apophis's Earth close approach on April 13, 2029 was generated by a Specific Action Team (SAT) formed by the Small Body Assessment Group (SBAG) at the request of NASAs Planetary Science Division (PSD). The SAT assessed the current predictions for the effects that may occur due to the close encounter, evaluated observing capabilities, and identified...
Authors
J. L. Dotson, M. Brozovic, S. Chesley, S. Jarmak, N. Moskovitz, A. Rivkin, P. Sanchez, D. Souami, Timothy N. Titus

Geochemistry of the Cretaceous Mowry Shale in the Wind River Basin, Wyoming Geochemistry of the Cretaceous Mowry Shale in the Wind River Basin, Wyoming

The siliceous nature of the Mowry Shale distinguishes it from many of the well-studied organic-rich mudstones of the Cretaceous Western Interior Seaway. Available models of organic enrichment in mudstones rarely incorporate detailed biomarker, bulk organic, inorganic, and mineralogy data. Here, we used these data to evaluate how variations in organic matter source, productivity, dilution...
Authors
Katherine L. French, Justin E. Birdwell, Paul G. Lillis

Interaction between transect design and animal distribution in distance sampling of deer Interaction between transect design and animal distribution in distance sampling of deer

We conducted a simulation study to evaluate the consequences of violating statistical assumptions of distance sampling (DS) on the bias and precision of population estimates of white-tailed deer (Odocoileus virginianus). Distance sampling is a method for estimating the density of organisms using a distribution of observed distances to individuals. A key assumption of DS is that sampling...
Authors
Nicholas S. Green, Mark L. Wildhaber, Janice L. Albers

Ecologically relevant moisture and temperature metrics for assessing dryland ecosystem dynamics Ecologically relevant moisture and temperature metrics for assessing dryland ecosystem dynamics

In drylands, water-limited regions that cover ~40% of the global land surface, ecosystems are primarily controlled by access to soil moisture and exposure to simultaneously hot and dry conditions. Quantifying ecologically relevant environmental metrics is difficult in drylands because the response of vegetation to moisture and temperature conditions is not easily explained solely by...
Authors
D. A. Chenoweth, Daniel Rodolphe Schlaepfer, J. C. Chambers, J. L. Brown, A. K. Urza, Brice Hanberry, D. Board, M. Crist, John B. Bradford

Dabbling duck eggs hatch after nest abandonment in the wild Dabbling duck eggs hatch after nest abandonment in the wild

In most birds, parental incubation of eggs is necessary for embryo development and survival. Using a combination of weekly nest visits, temperature dataloggers, infrared video cameras, and GPS tracking of hens, we documented several instances of duck eggs hatching after being abandoned by the incubating female. Of 2826 Mallard (Anas platyrhynchos) and Gadwall (Mareca strepera) nests...
Authors
Carley Rose Schacter, Brady Lynn Fettig, Sarah H. Peterson, C. Alex Hartman, Mark P. Herzog, Michael L. Casazza, Joshua T. Ackerman

Brown bear–sea otter interactions along the Katmai coast: Terrestrial and nearshore communities linked by predation Brown bear–sea otter interactions along the Katmai coast: Terrestrial and nearshore communities linked by predation

Sea otters were extirpated throughout much of their range by the maritime fur trade in the 18th and 19th centuries, including the coast of Katmai National Park and Preserve in southcentral Alaska. Brown bears are an important component of the Katmai ecosystem where they are the focus of a thriving ecotourism bear-viewing industry as they forage in sedge meadows and dig clams in the...
Authors
Daniel Monson, Rebecca L. Taylor, Grant Hilderbrand, Joy Erlenbach, Heather Coletti, James L. Bodkin

Deep learning for pockmark detection: Implications for quantitative seafloor characterization Deep learning for pockmark detection: Implications for quantitative seafloor characterization

Occurring globally, pockmarks are seafloor depressions associated with seabed fluid escape. Pockmark ubiquity and morphologic heterogeneity result in an irregular seafloor that can be difficult to quantitatively describe. To address this challenge, we test the hypothesis that deep-learning based object detection and segmentation can be used to develop data-driven models for pockmark...
Authors
Mark Lundine, Laura L. Brothers, Arthur Trembanis

Reproductive success of Red-Billed Tropicbirds (Phaethon aethereus) on St. Eustatius, Caribbean Netherlands Reproductive success of Red-Billed Tropicbirds (Phaethon aethereus) on St. Eustatius, Caribbean Netherlands

The daily nest-survival rates of Red-billed Tropicbirds (Phaethon aethereus) were estimated over six breeding seasons on St. Eustatius in the Caribbean. We analyzed 338 nesting attempts between 2013 and 2020. The daily survival rate (DSR) of tropicbird nests was modeled as a function of nest initiation date, sea surface temperature (SST), elevation, vegetation in front of the nest, and...
Authors
H. Madden, M. Leopold, F. Rivera-Milán, K. Verdel, E. Eggermont, Patrick G.R. Jodice

Factors affecting post-challenge survival of Flavobacterium psychrophilum in susceptible rainbow trout from the literature Factors affecting post-challenge survival of Flavobacterium psychrophilum in susceptible rainbow trout from the literature

Infectious bacterial pathogens are a concern for aquaculture as estimates suggest that billions of US dollars are lost annually in aquaculture due to disease. One of the most prevalent salmonid pathogens is the bacterium Flavobacterium psychrophilum that causes bacterial coldwater disease. We reviewed the published F. psychrophilum literature and conducted a Bayesian analysis to examine...
Authors
Brian W. Avila, Kathryn P. Huyvaert, Dana L. Winkelman, Eric R. Fetherman

Use of a riverscape-scale model of fundamental physical habitat requirements for freshwater mussels to quantify mussel declines in a mining-contaminated stream: The Big River, Old Lead Belt, Southeast Missouri Use of a riverscape-scale model of fundamental physical habitat requirements for freshwater mussels to quantify mussel declines in a mining-contaminated stream: The Big River, Old Lead Belt, Southeast Missouri

The research described in this report was conducted as part of the Natural Resource Damage Assessment and Restoration process in the Big River. Our purpose was to compare habitat features and landscape factors that may be important for the establishment and persistence of mussel concentrations between the Big River and the adjacent Bourbeuse and Meramec rivers, thereby testing their
Authors
Amanda E. Rosenberger, Garth A. Lindner
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