Software

Effective future fire planning and decision-making in Alaska requires accessible, interpretable, and locally relevant climate data to anticipate fire danger. To meet this need, we utilized an existing dataset of projected fire danger metrics from the Canadian Forest Fire Danger Rating System (Young et al. 2025). This dataset contains daily projections from 1980 through 2099 for key...

R code and Stan models to simulate sample data set, perform parameter estimation, project future scenarios, and produce plots for accompanying publication examining the integrated dynamics of waterfowl and hunter populations through harvest.

This software was developed using the statistical program R (R Core Team 2024) to compile multiple wildlife tracking datasets that contain locations of animals recorded through time. The software is organized through a series of scripts that run hierarchically through script sourcing. To demonstrate how the software works, we simulated four wildlife tracking datasets, each representing...

This script is for analyzing raw eDNA qPCR data. It is designed to efficiently concatenate qPCR data from multiple plates exported as *.csv files. It will assist with completing several QA/QC checks and output documentation of these checks as well as helpful files for further review.

The Operational Aftershock Forecasting server runs continuously in the cloud, monitoring the USGS ComCat earthquake catalog. It automatically generates aftershock forecasts and publishes them on the earthquake event pages. The analyst utilities are GUI programs that are used by analysts to evaluate the operation of the OAF servers, and make adjustments to the statistical model used by...

"Max spots" or "maxspots" refers to the locations of the local maxima of the horizontal gradient of potential fields such as gravity or magnetic anomalies. Because maxspots mark locations of abrupt change in the anomalies, they can be used to identify the edges of subsurface features with significant contrasts in density and/or magnetization, such as faults, intrusions, or lithologic...

This software contains 3 separate R Markdown files and 1 R script file that comprise an analysis to 1. collate freshwater fish survey data from within the northeastern United States, 2. develop separate models to predict the probability of occurrence and the proportional abundance of 53 freshwater fish species, and 3. combine model results by fish species traits and habitat...

Brook trout are a recreationally important fish species that need cold water for survival. The objective of this study was to quantify within- and among-population variability in HSP47 and CIRBP expression in four wild populations of brook trout (Salvelinus fontinalis) to quantify seasonal changes in gene expression. The code release contains a R script for the analysis of brook trout...

Aftershock Forecaster is a GUI program that runs on the desktop and is used to compute ETAS-based aftershock forecasts.

The script in this code repository simulates point-count data under an example scenario, sets up model input, and runs an N-mixture model with two components of detection (availability and perceptibility) to estimate the population trend. This simulation and analysis were developed to evaluate the consequences of changing spring phenology for estimating population trend of breeding bird

This repository specifically contains code to reproduce analyses in: Rose, J.P., Nguyen, A.M., Jordan, A.C., Macias, D.A., Schoenig, E.J., Napolitano G.R., Kim, R., Ersan, J.S.M., Fulton, A.M., and Halstead, B.J. 2025. Rice cultivation supports growth and survival of a threatened semi-aquatic reptile. In review.

In this tutorial users will learn how to verify downloaded files by generating checksums and comparing them to those provided by different endpoints in the M2M API.