Publications

The following standard operating procedure (SOP) outlines the procedure for selecting stream reaches to be used in Monitoring Wadeable Stream Habitat Conditions in Southeast Coast Network Parks: Protocol Narrative (McDonald et al. 2018a). The techniques and procedures outlined in this SOP are based on methods used by the U.S. Environmental Protection Agency (EPA 2013), the U.S...

The following standard operating procedure (SOP) outlines the process for setting up and configuring a total station to collect accurate x, y, and z coordinate data. Total stations allow accurate spatial data to be collected and tied to a permanent benchmark. These data can be used to detect small geomorphic changes between site surveys. Many different types of total stations and...

The invasive Burmese python (Python bivittatus) has been reproducing in the Florida Everglades since the 1980s. These giant constrictor snakes have caused a precipitous decline in small mammal populations in southern Florida following escapes or releases from the commercial pet trade. To better understand the invasion pathway and genetic composition of the population, two mitochondrial...

Mammals diversified by colonizing drastically different environments, with each transition yielding numerous molecular changes, including losses of protein function. Though not initially deleterious, these losses could subsequently carry deleterious pleiotropic consequences. We have used phylogenetic methods to identify convergent functional losses across independent marine mammal...

Aim Correlative distribution models have been used to identify potential climatic controls of mangrove range limits, but there is still uncertainty about the relative importance of these factors across different regions. To provide insights into the strength of climatic control of different mangrove range limits, we tested whether temporal variability in mangrove abundance increases near...

Effective conservation of endangered North Atlantic right whales (Eubalaena glacialis) requires information about their spatio-temporal distribution. Understanding temporal distribution is particularly important, because a portion of the population migrates between high latitude summer feeding grounds off the northeastern U.S. and Canadian Maritimes coasts and lower latitude calving and...

A Delft3D model was developed to evaluate the potential effects of proposed navigation channel deepening and widening in Mobile Harbor, Alabama. The model performance was assessed through comparisons of modeled and observed data of water levels, velocities, and bed level changes; the model captured hydrodynamic and sediment transport patterns in the study area with skill. The validated...

Reserve design is a process that can address ecological, social, and political factors to identify parcels of land needed to sustain wildlife populations and other natural resources. Acquisition of parcels for a large terrestrial reserve is difficult because it typically occurs over a long timeframe and thus invokes consideration of future conditions such as climate and urbanization...

The upper beach, between the astronomical high tide and the dune-toe, supports habitat and recreation along many beaches, making predictions of upper beach change valuable to coastal managers and the public. We developed and tested a Bayesian network (BN) to predict the cross-shore position of an upper beach elevation contour (ZlD) following 1 month to 1-year intervals at Fire Island...

The Floristic Quality Index (FQI) has been used in many areas throughout the United State to assess the integrity of plant communities and restoration projects. Here, we summarize two tools that have been developed for monitoring sites in coastal Louisiana wetlands. The FQI was modified for herbaceous data collected in coastal Louisiana monitoring sites. A second FQI, the Forested...

The West Florida Shelf (WFS) is a source of uncertainty for the Gulf of Mexico carbon budget. Data from the synthesis of approximately 135,000 pCO2 values from over 96 cruises from the WFS show that the shelf waters fluctuate between being a weak source to a weak sink of carbon with the atmosphere. Overall, the shelf acts as a weak source of CO2 at 0.32 ± 1.5 mol m-2 yr-1. Subregions...

Cold-water corals provide critical habitats for a multitude of marine species, but are understudied relative to tropical corals. Primnoa pacifica is a cold-water coral prevalent throughout Alaskan waters, while another species in the genus, Primnoa resedaeformis, is widely distributed in the Atlantic Ocean. This study examined the V4-V5 region of the 16S rRNA gene after amplifying and