Mark's research expertise is in soil microbial ecology and biogeochemistry in response to global change phenomenon. He leads a team focused on studies of microbial, chemical, and biophysical controls on carbon cycling in permafrost, boreal, and wetland ecosystems of Alaska as well as forest and grassland ecosystems of the Western U.S.

Synergistic Activities

USGS Menlo Park Science Advisory Council Member

US Permafrost Association President

Affiliate/Graduate Faculty, University of Alaska Fairbanks & University of Guelph

Bonanza Creek LTER and Alaska Peatland Experiment (APEX), Principal Investigator

International Soil Carbon Network (NSCN) member

Integrated Ecosystem Model data contributor, AK Climate Science Center

Permafrost Research Coordination Network contributor

Environmental Microbiome Project (EMP) member

North American Carbon Program (NACP), affiliated project lead

Professional Experience

2013- current Project Chief, Mechanisms of Soil Carbon Sequestration
2007- current Research Soil Scientist, USGS, Menlo Park, CA.
2005-2007 Mendenhall Research Fellow, USGS, Menlo Park, CA.
2002-2004 Postdoctoral Fellow, The University of Michigan

Education and Certifications

2002-University of California at Berkeley, Ph.D., Soil Science
1997-University of California at Berkeley, M.S., Soil Science
1995-New Mexico State Univ, B.S. Biology/Ecology, and B.S. Soil Science

Science and Products

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Data
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Below are Mark's related science projects

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Image: Studying Old Organic Carbon in the Yukon River

December 31, 2010

Understanding the Impacts of Permafrost Change: Providing Input into the Alaska Integrated Ecosystem Model

Ongoing climate change has the potential to negatively impact Alaska’s ecosystems and the critical services that they provide. These ecosystem services include supplying food and fiber for Alaskan communities, offering opportunities for recreational, cultural, and spiritual activities, and regulating temperature and water flow (runoff, flooding, etc.). Scientists build models to better

Climate Adaptation Science Centers

Understanding the Impacts of Permafrost Change: Providing Input into the Alaska Integrated Ecosystem Model

December 31, 2010

Understanding the Impacts of Permafrost Change: Providing Input into the Alaska Integrated Ecosystem Model

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August 3, 2021

Permafrost greenhouse gas and microbial data from the Alaska Peatland Experiment (APEX) 2017 to 2019 Permafrost greenhouse gas and microbial data from the Alaska Peatland Experiment (APEX) 2017 to 2019

These data include permafrost gas concentration data from the Alaska Peatland Experiment at various depths, times, and locations

Ecosystems Land Change Science Program, Geology, Minerals, Energy, and Geophysics Science Center

June 23, 2021

Permafrost characterization at the Alaska Peatland Experiment (APEX) site: Geophysical and related field data collected from 2018-2020 Permafrost characterization at the Alaska Peatland Experiment (APEX) site: Geophysical and related field data collected from 2018-2020

Geophysical measurements and related field data were collected by the U.S. Geological Survey (USGS) at the Alaska Peatland Experiment (APEX) site in Interior Alaska from 2018 to 2020 to characterize subsurface thermal and hydrologic conditions along a permafrost thaw gradient. The APEX site is managed by the Bonanza Creek LTER (Long Term Ecological Research). In April 2018, seven...

Geology, Geophysics, and Geochemistry Science Center

May 27, 2021

Flux and Soil Data from the Alaska Peatland Experiment 2014 to 2016 Flux and Soil Data from the Alaska Peatland Experiment 2014 to 2016

This dataset supports a published study on the effects of permafrost thaw on greenhouse gas fluxes and microbial activities at the Alaska Peatland Experiment (APEX), part of the Bonanza Creek LTER, in interior Alaska. The dataset includes autochamber CO2 and CH4 fluxes, net ecosystem exchange, ecosystem respiration, soil temperatures, climate data, microbial qPCR data, soil physical...

Ecosystems Land Change Science Program

November 12, 2020

Microbial Carbon and Nitrogen Metabolism Across a Late Pleistocene Permafrost Chronosequence Microbial Carbon and Nitrogen Metabolism Across a Late Pleistocene Permafrost Chronosequence

This data release includes all of the data presented in the peer-reviewed publication "Life at the frozen limit: Microbial Carbon Metabolism Across a Late Pleistocene Permafrost Chronosequence". We collected permafrost from a Pleistocene chronosequence (19 ka to 33 ka) to examine (1) changes in the functional genetic potential of extant microbial communities to metabolize polysaccharides...

Geology, Minerals, Energy, and Geophysics Science Center

April 2, 2020

Permafrost Mapping in Two Wetland Systems North of the Tanana River in Interior Alaska 2014 Permafrost Mapping in Two Wetland Systems North of the Tanana River in Interior Alaska 2014

Surface-based 2D electrical resistivity tomography (ERT) surveys were used to investigate the distribution of permafrost at wetland sites on the alluvial plain north of the Tanana River, 20 km southwest of Fairbanks, Alaska, in June and September 2014. The sites contained habitat types characteristic of interior Alaska, including thermokarst bog, forested permafrost plateau, and a rich...

Water Resources Mission Area

July 8, 2019

Batch sorption data, respired CO2, extractable DOC, and Raman spectra collected from an incubation with microbial necromass on feldspar or amorphous aluminum hydroxide Batch sorption data, respired CO2, extractable DOC, and Raman spectra collected from an incubation with microbial necromass on feldspar or amorphous aluminum hydroxide

These datasets are from an incubation experiment with a combination of two minerals (feldspar or amorphous aluminum hydroxide), one living species of bacteria (Escherichia coli), and one added form of C (Arthrobacter crystallopoietes necromass). We characterized the sorptive properties of the minerals with batch sorption experiments using four low molecular weight C substrates (glucose...

Ecosystems Land Change Science Program, Geology, Minerals, Energy, and Geophysics Science Center, Geosciences and Environmental Change Science Center

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March 28, 2024

Canopy cover and microtopography control precipitation-enhanced thaw of ecosystem-protected permafrost Canopy cover and microtopography control precipitation-enhanced thaw of ecosystem-protected permafrost

Northern high-latitudes are projected to get warmer and wetter, which will affect rates of permafrost thaw and mechanisms by which thaw occurs. To better understand the impact of rain, as well as other factors such as snow depth, canopy cover, and microtopography, we instrumented a degrading permafrost plateau in south-central Alaska with high-resolution soil temperature sensors. The...

Authors

Joel Eklof, Benjamin M. Jones, Baptiste Dafflon, Elise Devoie, Katie M. Ring, Marie English, Mark Waldrop, Rebecca Neumann

Ecosystems Land Change Science Program, Geology, Minerals, Energy, and Geophysics Science Center

November 28, 2023

Practical guide to measuring wetland carbon pools and fluxes Practical guide to measuring wetland carbon pools and fluxes

Wetlands cover a small portion of the world, but have disproportionate influence on global carbon (C) sequestration, carbon dioxide and methane emissions, and aquatic C fluxes. However, the underlying biogeochemical processes that affect wetland C pools and fluxes are complex and dynamic, making measurements of wetland C challenging. Over decades of research, many observational...

Authors

Sheel Bansal, Irena F. Creed, Brian Tangen, Scott D. Bridgham, Ankur R. Desai, Ken Krauss, Scott C Neubauer, Gregory E. Noe, Donald O. Rosenberry, Carl C. Trettin, Kimberly Wickland, Scott T. Allen, Ariane Arias-Ortiz, Anna R. Armitage, Dennis Baldocchi, Kakoli Banerjee, David Bastviken, Peter Berg, Matthew J. Bogard, Alex T. Chow, William H. Conner, Christopher Craft, Courtney Creamer, Tonya Delsontro, Jamie Duberstein, Meagan J. Eagle, M. Siobhan Fennessey, Sarah A. Finkelstein, Mathias Goeckede, Sabine Grunwald, Meghan Halibisky, Ellen R. Herbert, Mohammad Jahangir, Olivia Johnson, Miriam C. Jones, Jeffrey Kelleway, Sarah Knox, Kevin D. Kroeger, Kevin Kuehn, David Lobb, Amanda Loder, Shizhou Ma, Damien Maher, Gavin McNicol, Jacob Meier, Beth A. Middleton, Christopher T. Mills, Purbasha Mistry, Abhijith Mitra, Courtney Mobilian, Amanda M. Nahlik, Sue Newman, Jessica O’Connell, Patty Oikawa, Max Post van der Burg, Charles A Schutte, Chanchung Song, Camille L. Stagg, Jessica Turner, Rodrigo Vargas, Mark Waldrop, Markus Wallin, Zhaohui Aleck Wang, Eric Ward, Debra A. Willard, Stephanie A. Yarwood, Xiaoyan Zhu

Ecosystems Mission Area, Water Resources Mission Area, Ecosystems Land Change Science Program, Florence Bascom Geoscience Center, Geology, Minerals, Energy, and Geophysics Science Center, Geosciences and Environmental Change Science Center, Northern Prairie Wildlife Research Center, Wetland and Aquatic Research Center , Woods Hole Coastal and Marine Science Center

May 22, 2023

Permafrost microbial communities and functional genes are structured by latitudinal and soil geochemical gradients Permafrost microbial communities and functional genes are structured by latitudinal and soil geochemical gradients

Permafrost underlies approximately one quarter of Northern Hemisphere terrestrial surfaces and contains 25–50% of the global soil carbon (C) pool. Permafrost soils and the C stocks within are vulnerable to ongoing and future projected climate warming. The biogeography of microbial communities inhabiting permafrost has not been examined beyond a small number of sites focused on local...

Authors

Mark Waldrop, Chris Chabot, Susanne Liebner, Sheila Holmes, Marcia Snyder, Martin L. Dillon, S Dudgeon, Thomas A. Douglas, Mary-Catherine Leewis, Katie M Walter- Anthony, Jack McFarland, Christopher D. Arp, Allen C. Bondurant, Neslihan Tas, Rachel Mackelprang

Ecosystems Land Change Science Program, Geology, Minerals, Energy, and Geophysics Science Center

November 23, 2022

Variation in carbon and nitrogen concentrations among peatland categories at the global scale Variation in carbon and nitrogen concentrations among peatland categories at the global scale

Peatlands account for 15 to 30% of the world’s soil carbon (C) stock and are important controls over global nitrogen (N) cycles. However, C and N concentrations are known to vary among peatlands contributing to the uncertainty of global C inventories, but there are few global studies that relate peatland classification to peat chemistry. We analyzed 436 peat cores sampled in 24 countries...

Authors

Shaun A. Watmough, Spencer Gilbert-Parkes, Nathan Basiliko, Louis J. Lamit, Erik A. Lilleskov, Roxanne Andersen, Jhon del Aguila-Pasquel, Rebekka E. Artz, Brian W. Benscoter, Werner Borken, Luca Bragazza, Stefani M. Brandt, Suzanna L. Brauer, Michael A. Carson, Xin Chen, Rodney A. Chimner, Bev R. Clarkson, Alexander R. Cobb, Andrea S. Enriquez, Jenny Farmer, Samantha P. Grover, Charles F. Harvey, Lorna I. Harris, Christina Hazard, Alison M. Hoyt, John Hribljan, Jyrki Jauhiainen, Sari Juutinen, Evan S. Kane, Klaus-Holger Knorr, Randy Kolka, Mari Kononen, Anna M. Laine, Tuula Larmola, Patrick A. Levasseur, Carmody K. McCalley, Jim McLaughlin, Tim R. Moore, Nadia Mykytczuk, Anna E. Normand, Virginia Rich, Bryce Robinson, Danielle L. Rupp, Jasmine Rutherford, Christopher W. Schadt, Dave S. Smith, Graeme Spiers, Leho Tedersoo, Pham Q. Thu, Carl C. Trettin, Eeva-Stiina Tuittila, Merritt Turetsky, Zuzana Urbanova, Ruth K. Varner, Mark Waldrop, Meng Wang, Zheng Wang, Matt Warren, Magdalena M. Wiedermann, Shanay T. Williams, Joseph B. Yavitt, Zhi-Guo Yu, Geoff Zahn

Geology, Minerals, Energy, and Geophysics Science Center

September 22, 2022

The biogeography of relative abundance of soil fungi versus bacteria in surface topsoil The biogeography of relative abundance of soil fungi versus bacteria in surface topsoil

Fungi and bacteria are the two dominant groups of soil microbial communities worldwide. By controlling the turnover of soil organic matter, these organisms directly regulate the exchange of carbon between the soil and the atmosphere. Fundamental differences in the physiology and life history of bacteria and fungi suggest that variation in the biogeography of soil fungal and bacterial...

Authors

Kailiang Yu, Johan van den Hoogen, Zhiqiang Wang, Colin Averill, Devin Routh, Gabriel Reuben Smith, Rebecca E. Drenovsky, Kate M. Scow, Fei Mo, Mark Waldrop, Yuanhe Yang, Weize Tang, Franciska De Vries, Richard D. Bardgett, Peter Manning, Felipe Bastida, Sara G. Baer, Elizabeth Bach, Carlos J. Garcia, Qingkui Wang, Linna Ma, Baodong Chen, Xianjing He, Sven Teurlinex, Amber Heijboer, James A. Bradley, Thomas W. Crowther

Ecosystems Land Change Science Program, Geology, Minerals, Energy, and Geophysics Science Center

September 1, 2022

Microbiome assembly in thawing permafrost and its feedbacks to climate Microbiome assembly in thawing permafrost and its feedbacks to climate

The physical and chemical changes that accompany permafrost thaw directly influence the microbial communities that mediate the decomposition of formerly frozen organic matter, leading to uncertainty in permafrost–climate feedbacks. Although changes to microbial metabolism and community structure are documented following thaw, the generality of post-thaw assembly patterns across...

Authors

Jessica G. Ernakovich, Robyn A. Barbato, Virginia Rich, Christina Schädel, Rebecca E. Hewitt, Stacey Doherty, Emily Whalen, Benjamin Abbott, Jiri Barta, Christina Biasi, Chris Chabot, Jenni Hultman, Christian Knoblauch, Maggie Chui Yim Lau Vetter, Mary-Cathrine Leewis, Susanne Liebner, Rachel Mackelprang, Tullis Onstott, Andreas Richter, Ursel M. E. Schutte, Henri Siljanen, Neslihan Tas, Ina Timling, Tatiana Vishnivetskaya, Mark Waldrop, Matthias Winkel

Ecosystems Land Change Science Program, Geology, Minerals, Energy, and Geophysics Science Center