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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 43179

Proactive Rainbow Trout suppression reduces threat of hybridization in the Upper Snake River Basin Proactive Rainbow Trout suppression reduces threat of hybridization in the Upper Snake River Basin

Preserving remaining nonhybridized populations Cutthroat Trout Oncorhynchus clarkii is a conservation priority often requiring management action. Although proactive programs for Rainbow Trout O. mykiss and hybrid suppression offer a flexible tool, particularly in large interconnected river basins, this management approach is used less frequently than alternatives such as barriers and...
Authors
Ryan Kovach, Robert Al-Chokhachy, Tracy Stephens

Opportunistically collected data reveal habitat selection by migrating Whooping Cranes in the U.S. Northern Plains Opportunistically collected data reveal habitat selection by migrating Whooping Cranes in the U.S. Northern Plains

The Whooping Crane (Grus americana) is a federally endangered species in the United States and Canada that relies on wetland, grassland, and cropland habitat during its long migration between wintering grounds in coastal Texas, USA, and breeding sites in Alberta and Northwest Territories, Canada. We combined opportunistic Whooping Crane sightings with landscape data to identify...
Authors
Neal D. Niemuth, Adam J. Ryba, Aaron T. Pearse, Susan M. Kvas, David A. Brandt, Brian Wangler, Jane E. Austin, Martha J. Carlisle

Surveys of environmental DNA (eDNA): a new approach to estimate occurrence in Vulnerable manatee populations Surveys of environmental DNA (eDNA): a new approach to estimate occurrence in Vulnerable manatee populations

Environmental DNA (eDNA) detection is a technique used to non-invasively detect cryptic, low density, or logistically difficult-to-study species, such as imperiled manatees. For eDNA measurement, genetic material shed into the environment is concentrated from water samples and analyzed for the presence of target species. Cytochrome bquantitative PCR and droplet digital PCR eDNA assays...
Authors
Margaret Hunter, Gaia Meigs-Friend, Jason A. Ferrante, Aristide Takoukam Kamla, Robert Dorazio, Lucy Keith Diagne, Fabia Luna, Janet M. Lanyon, James P. Reid

Coastal estuaries and lagoons: The delicate balance at the edge of the sea Coastal estuaries and lagoons: The delicate balance at the edge of the sea

Coastal communities are increasingly concerned about the dynamic balance between freshwater and saltwater because of its implications for societal, economic, and ecological resources. While the mixing of freshwater and saltwater sources defines coastal estuaries and lagoons, sudden changes in this balance can have a large effect on critical ecosystems and infrastructure. Any change to...
Authors
Paul A. Conrads, Kirk D. Rodgers, Davina L. Passeri, Scott T. Prinos, Christopher Smith, Christopher M. Swarzenski, Beth A. Middleton

Brown trout in the Lees Ferry reach of the Colorado River—Evaluation of causal hypotheses and potential interventions Brown trout in the Lees Ferry reach of the Colorado River—Evaluation of causal hypotheses and potential interventions

Over the period 2014–2016, the number of nonnative brown trout (Salmo trutta) captured during routine monitoring in the Lees Ferry reach of the Colorado River, downstream of Glen Canyon Dam, began increasing. Management agencies and stakeholders have questioned whether the increase in brown trout in the Lees Ferry reach represents a threat to the endangered humpback chub (Gila cypha), to...
Authors
Michael C. Runge, Charles B. Yackulic, Lucas S. Bair, Theodore A. Kennedy, Richard A. Valdez, Craig Ellsworth, Jeffrey L. Kershner, R. Scott Rogers, Melissa A. Trammell, Kirk L. Young

Decision support frameworks and tools for conservation Decision support frameworks and tools for conservation

The practice of conservation occurs within complex socioecological systems fraught with challenges that require transparent, defensible, and often socially engaged project planning and management. Planning and decision support frameworks are designed to help conservation practitioners increase planning rigor, project accountability, stakeholder participation, transparency in decisions...
Authors
Mark W. Schwartz, Carly N. Cook, Robert L. Pressey, Andrew S. Pullin, Michael C. Runge, Nick Salafsky, William J. Sutherland, Matthew A. Williamson

Thinning, tree-growth, and resistance to multi-year drought in a mixed-conifer forest of northern California Thinning, tree-growth, and resistance to multi-year drought in a mixed-conifer forest of northern California

Drought is an important stressor in forest ecosystems that can influence tree vigor and survival. In the U.S., forest managers use two primary management techniques to promote resistance and resilience to drought: prescribed fire and mechanical thinning. Generally applied to reduce fuels and fire hazard, treatments may also reduce competition for resources that may improve tree-growth...
Authors
Michael J. Vernon, Rosemary L. Sherriff, Phillip J. van Mantgem, Jeffrey M. Kane

Evaluating autonomous acoustic surveying techniques for rails in tidal marshes Evaluating autonomous acoustic surveying techniques for rails in tidal marshes

There is a growing interest toward the use of autonomous recording units (ARUs) for acoustic surveying of secretive marsh bird populations. However, there is little information on how ARUs compare to human surveyors or how best to use ARU data that can be collected continuously throughout the day. We used ARUs to conduct 2 acoustic surveys for king (Rallus elegans) and clapper rails (R...
Authors
Lydia L. Stiffler, James T. Anderson, Todd E. Katzner

Golden eagle (Aquila chrysaetos) habitat selection as a function of land use and terrain, San Diego County, California Golden eagle (Aquila chrysaetos) habitat selection as a function of land use and terrain, San Diego County, California

Beginning in 2014, the U.S. Geological Survey, in collaboration with Bloom Biological, Inc., began telemetry research on golden eagles (Aquila chrysaetos) captured in the San Diego, Orange, and western Riverside Counties of southern California. This work was supported by the San Diego Association of Governments, California Department of Fish and Wildlife, the U.S. Fish and Wildlife...
Authors
Jeff A. Tracey, Melanie C. Madden, Peter H. Bloom, Todd E. Katzner, Robert N. Fisher

Science partnership between U.S. Geological Survey and the Lower Elwha Klallam Tribe—Understanding the Elwha River Dam Removal Project Science partnership between U.S. Geological Survey and the Lower Elwha Klallam Tribe—Understanding the Elwha River Dam Removal Project

After nearly a century of producing power, two large hydroelectric dams on the Elwha River in Washington State were removed during 2011 to 2014 to restore the river ecosystem and recover imperiled salmon populations. Roughly two-thirds of the 21 million cubic meters of sediment—enough to fill nearly 2 million dump trucks—contained behind the dams was released downstream, which restored...
Authors
Jeffrey J. Duda, Matt M. Beirne, Jonathan A. Warrick, Christopher S. Magirl

Relative contributions of microbial and infrastructure heat at a crude oil-contaminated site Relative contributions of microbial and infrastructure heat at a crude oil-contaminated site

Biodegradation of contaminants can increase the temperature in the subsurface due to heat generated from exothermic reactions, making temperature observations a potentially low-cost approach for determining microbial activity. For this technique to gain more widespread acceptance, it is necessary to better understand all the factors affecting the measured temperatures. Biodegradation has...
Authors
Ean Warren, Barbara A. Bekins
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