Publications

Water diversions that support agricultural and municipal use result in fish mortality through entrainment and impingement. Additionally, this infrastructure may attract both predators and prey fishes, thereby increasing predation rates and prey mortality near these anthropogenic contact points. The Sacramento–San Joaquin Delta (the Delta) in California's Central Valley is a tidal...

Many river systems within the Central Valley of California have been disconnected from their floodplains, hypothesized to be partially responsible for declining Chinook salmon populations (Oncorhynchus tshawytscha). The primary floodplain of the system, Yolo By-Pass (known regionally as “Yolo Bypass”), offered an opportunity to examine whether improved connectivity between the floodplain...

Executive Summary Climate is the primary driver of environmental change and is a key consideration in defining science priorities conducted across all mission areas in the U.S. Geological Survey (USGS). Recognizing the importance of climate change to its future research agenda, the USGS’s Climate Science Steering Committee requested the development of a Climate Science Plan to identify...

Objective The Redeye Bass Micropterus coosae is a piscivore introduced into California, which has become a threat to the state's endemic freshwater fishes. It has eliminated native fishes from the middle reaches of the Cosumnes River, our study stream, which is the largest stream without a major dam on its main stem in the Sacramento–San Joaquin River drainage, central California, USA...

Broad infestations of invasive, non-native vegetation have transformed wetlands around the world. Ludwigia hexapetala is a widespread, amphibious invasive plant with a creeping growth habit in open water and an erect growth habit in terrestrial habitats. In the upper San Francisco Estuary of California, L. hexapetala is increasingly terrestrializing into marshes and this expansion may be

Executive Summary Fish stranding has been studied in select rivers worldwide, often with the purpose of determining how to mitigate adverse effects of dam operations on highly valued salmon and trout populations. However, where a reduction in trout population size is desired by resource managers, as is the case downstream of the Glen Canyon Dam on the Colorado River, flow manipulations...

Groundwater resources are utilized near areas of intensive oil and gas development in California’s San Joaquin Valley. In this study, we examined chemical and isotopic data to assess if thermogenic gas or saline water from oil producing formations have mixed with groundwater near the Elk Hills and North Coles Levee Oil Fields in the southwestern San Joaquin Valley. Major ion...

Predicting harmful algal blooms (HABs) requires integrating physical, chemical, and biological data collected from observing networks and then assimilating these data into models, which are used to generate forecasts. In 2005, the Harmful Algal Research and Response: A National Environmental Science Strategy 2005-2015 (HARRNESS, 2005) made recommendations on how to improve HAB modeling...

Estimation of human water withdrawals is more important now than ever due to uncertain water supplies, population growth, and climate change. Fourteen percent of the total water withdrawal in the United States is used for public supply, typically including deliveries to domestic, commercial, and occasionally including industrial, irrigation, and thermoelectric water withdrawal. Stewards...

Managed flow pulses in the north Sacramento-San Joaquin Delta are an adaptive management tool used in efforts to enhance food availability in delta smelt (Hypomesus transpacificus) habitat as part of the North Delta Food Subsidies Action. The California Department of Water Resources (DWR) monitors non-managed seasonal and local flow pulses and managed flow pulses from agricultural...

Machine learning (ML) models are increasingly popular in environmental and hydrologic modeling, but they typically contain uncertainties resulting from noisy data (erroneous or outlier data). This paper presents a novel probabilistic approach that combines ML and Markov Chain Monte Carlo simulation to (1) detect and underweight likely noisy data, (2) develop an approach capable of...

Avian droppings (combination of fecal matter and urates) provide a non-lethal and non-invasive matrix for measuring pesticide exposures. In the field, droppings may be collected days or weeks after excretion and the persistence of pesticide residues in weathered droppings is not known. Thus, we studied the effects of weathering on pesticide residues in droppings. Domestic chicken (Gallus...