Publications

Outbreaks of coral disease have been a dominant force shaping western Atlantic coral-reef assemblages since the late 1970s. Stony coral tissue loss disease (SCTLD) is nonetheless having an unprecedented impact in the region. Whereas numerous studies over the last decade have worked to characterize this novel pathogen and its impacts on coral populations, few have quantified its...

Aquifer storage and recovery (ASR) can augment water supplies and hydrologic flows under varying climatic conditions. However, imposing drinking water regulations on ASR practices, including pre-treatment before injection into the aquifer, remains arguable. Microbial inactivation data—Escherichia coli, Pseudomonas aeruginosa, poliovirus type 1 and Cryptosporidium parvum—were used in a...

Effective treatment and prevention of any disease necessitates knowledge of the causative agent, yet the causative agents of most coral diseases remain unknown, in part due to the difficulty of distinguishing the pathogenic microbe(s) among the complex microbial backdrop of coral hosts. Stony coral tissue loss disease (SCTLD) is a particularly destructive disease of unknown etiology...

Marine seismic reflection data acquired across the Gulf of Mexico during oil and gas exploration are available to the public through an online database archive. The data are archived as two-dimensional multichannel seismic data in two digital formats. The formats include image files in portable document format (PDF), and binary files in industry standard Society for Exploration...

The effects of interior headland restoration on estuarine sediment transport processes were assessed through process-based numerical modeling. Three proposed interior headland restoration scenarios in the Grand Bay estuary (Mississippi/Alabama) were modeled using Delft3D to understand impacts on suspended sediment concentrations, bed level morphology, and sediment fluxes under present...

Over the past decade, an abundance of 16S rRNA gene surveys have provided microbiologists with data regarding the prokaryotes present in a coral-associated microbial community. Functional gene studies that provide information regarding what those microbes might do are fewer, particularly for non-tropical corals. Using the GeoChip 5.0S microarray, we present a functional gene study of...

Shallow subsurface geologic data recorded as high-resolution seismic profiles are used to interpret the geology of coastal and marine systems. These data were originally recorded on paper rolls that are stored in geophysical archives. Data collection has since converted to entirely digital formats, yet the analog data are still useful for geologic interpretation. This report describes...

The iconic and threatened Caribbean coral, Acropora palmata, is an essential reef-ecosystem engineer. Understanding the processes underpinning this coral’s survival and growth is essential to restoring this foundational species. Here, we compared replicate A. palmata colonies transplanted along 350 km of Florida’s offshore coral reef to determine holobiont and/or environmental variables...

Sand ripples significantly impact morphodynamics in the nearshore by generating coherent vortices, which can transport suspended sediment to greater heights in the water column than above flat beds. Coherent vortices can trap sediment grains if the settling velocity of the grain is smaller than the maximum vertical fluid velocity in the vortex (Nielsen 1992). Particle image and tracking...

Nearshore bathymetry is difficult to measure using survey methods when wave heights approach the breaking limit. Remote sensing using digital cameras offers a way to observe the surf zone and calculate water depths based on phase speed but comes with its challenges of potentially noisy data that can introduce error into estimates of frequency and wavenumber used in phase speed...

The effects of large-scale interior headland restoration on tidal hydrodynamics and salinity transport in an open coast, marine dominant estuary (Grand Bay, Alabama, U.S.A) are investigated using a two-dimensional model, the Discontinuous-Galerkin Shallow Water Equations Model (DG-SWEM). Three restoration alternatives are simulated for present-day conditions, as well as under 0.5 m of...

Sandy beaches perched over rocky shore platforms are common globally, yet their mixed sand and rocky morphology present challenges for quantifying and predicting wave runup and inundation. For typical linear beach profiles, simple relationships can be made between vertical runup and horizontal inundation based on beach slope. However, as topographic irregularities increase, substantial...