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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42702

Presence of hummock and hollow microtopography reflects shifting balances of shallow subsidence and root zone expansion along forested wetland river gradients Presence of hummock and hollow microtopography reflects shifting balances of shallow subsidence and root zone expansion along forested wetland river gradients

Tidal freshwater forested wetlands (TFFWs) are in an active phase of transition to tidal marsh with sea level rise and salinity incursion along the Atlantic and Gulf Coasts of the United States (U.S.). A prominent feature of TFFWs is hummock/hollow microtopography where hollows represent the flat, base-elevation of the floodplain where inundation occurs relatively frequently, while...
Authors
Ken Krauss, Gregory E. Noe, Jamie A. Duberstein, Nicole Cormier, Andrew From, Thomas Rossiter Doody, William H. Conner, Donald Cahoon, Darren Johnson

Validation of a species-specific probe-based qPCR assay for the threatened meltwater stonefly, Lednia tumana, in environmental samples Validation of a species-specific probe-based qPCR assay for the threatened meltwater stonefly, Lednia tumana, in environmental samples

A probe-based quantitative real-time PCR assay was developed to detect meltwater stonefly (Lednia tumana) environmental (e)DNA in water samples. The limits of detection and quantification, respectively, were 12.1 and 58.4 gene copies for calibration standards and these values were similarly low in a relevant environmental sample matrix (8.6 and 174.2, respectively). The assay’s utility...
Authors
Patrick Ross Hutchins, Jonathan Giersch, Adam Sepulveda, Clint C. Muhlfeld

Development of a quantitative PCR assay for detecting northwest salamander (ambystoma gracile) in environmental DNA samples Development of a quantitative PCR assay for detecting northwest salamander (ambystoma gracile) in environmental DNA samples

We developed a primer and probe based quantitative PCR assay for use with environmental DNA to detect Northwest salamander (Ambystoma gracile), a species endemic to the temperate Pacific coastal region of North America. The assay targets a region in the mitochondrial DNA (mtDNA) D-loop gene. Tests of the assay were performed in silico (using the NCBI BLAST tool), in vitro (using DNA...
Authors
Marshal Hoy, Carl Ostberg

2023 Coastal master plan: ICM-wetlands – Submerged aquatic vegetation (SAV) updates 2023 Coastal master plan: ICM-wetlands – Submerged aquatic vegetation (SAV) updates

Submerged aquatic vegetation (SAV) provides critical structural habitat for valuable nekton and wildlife species across coastal ecosystems and can buffer the negative effects of land loss. Landscape change and restoration efforts across coastal Louisiana can impact the occurrence, coverage, and species assemblages of SAV, and changes to these foundational species can have cascading...
Authors
Kristin DeMarco, Donald Schoolmaster, Brady Couvillion

2023 Coastal master plan: Landscape input data 2023 Coastal master plan: Landscape input data

Coastal Louisiana is a complex landscape. The composition of the landscape, as well as the processes which influence said landscape, vary in both space and time. The models used in the 2023 Coastal Master Plan must attempt to reflect that spatial and temporal variability. It is therefore of the utmost importance that the spatial data sets upon which the models are initialized are of the...
Authors
Brady Couvillion

Modeling habitat suitability across different levels of invasive plant abundance Modeling habitat suitability across different levels of invasive plant abundance

Predicting where invasive plants are likely to spread and become abundant is critical for informing invasive plant management. Species distribution models are a key tool for informing the geography of invasion risk, but most distribution models are limited by their use of presence data, including no information on invader population abundance. In this study, we ask how habitat...
Authors
Evelyn M. Beaury, Catherine S. Jarnevich, Ian Pearse, Annette E. Evans, Nathan Teich, Peder Engelstad, Jillian LaRoe, Bethany A. Bradley

Using state-and-transition simulation models to scope post-fire success in restoring greater sage-grouse habitat Using state-and-transition simulation models to scope post-fire success in restoring greater sage-grouse habitat

Wildfires are increasingly modifying wildlife habitat in the western United States and managers need ways to scope the pace and degree to which post-fire restoration actions can re-create habitat in dynamic landscapes. We developed a spatially explicit state-transition simulation model (STSM) to project post-fire revegetation and the potential for sage-grouse habitat restoration in...
Authors
Elizabeth Kari Orning, Julie A. Heinrichs, David A. Pyke, Peter S. Coates, Cameron L. Aldridge

Assessing impacts of human stressors on stream fish habitats across the Mississippi River basin Assessing impacts of human stressors on stream fish habitats across the Mississippi River basin

Effective conservation of stream fishes and their habitats is complicated by the fact that human stressors alter the way in which natural factors such as stream size, catchment geology, and regional climate influence stream ecosystems. Consequently, efforts to assess the condition of stream fishes and their habitats must not only attempt to characterize the effects of human stressors but...
Authors
Jared Ross, Dana M. Infante, Arthur R. Cooper, Joanna B. Whittier, Wesley Daniel

Least Bell's Vireos and Southwestern Willow Flycatchers at the San Luis Rey Flood Risk Management Project Area in San Diego County, California—Breeding activities and habitat use—2022 annual report Least Bell's Vireos and Southwestern Willow Flycatchers at the San Luis Rey Flood Risk Management Project Area in San Diego County, California—Breeding activities and habitat use—2022 annual report

Executive Summary We completed four protocol surveys for Least Bell’s Vireos (Vireo bellii pusillus; vireo) during the breeding season, supplemented by weekly territory monitoring visits. We identified a total of 133 territorial male vireos; 114 were confirmed as paired, and 3 were confirmed as single males. For the remaining 16 territories, we were unable to confirm breeding status. Two...
Authors
Alexandra Houston, Lisa D. Allen, Shannon M. Mendia, Barbara E. Kus

A decision framework for the management of established biological invasions A decision framework for the management of established biological invasions

In some cases, managing an established invasive species may do more harm to an ecosystem than allowing the invader to persist. Given limited resources available to land managers and the realities of conservation triage, we recognized the need for systematic guidance for management decisions made at the “late end” of the invasion curve. We gathered an interdisciplinary group of experts...
Authors
C. D. Robichaud, R. C. Rooney, B. M. H. Larson, S. E. Wolfe, Z. Nyssa, Kurt P. Kowalski, H. Braun
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