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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42702

Exposure to synthetic hydraulic fracturing waste influences the mucosal bacterial community structure of the brook trout (Salvelinus fontinalis) epidermis Exposure to synthetic hydraulic fracturing waste influences the mucosal bacterial community structure of the brook trout (Salvelinus fontinalis) epidermis

Production of natural gas using unconventional technologies has risen as demand for alternative fuels has increased. Impacts on the environment from waste generated from these processes are largely unexplored. In particular, the outcomes of organismal exposure to hydraulic fracturing waste have not been rigorously evaluated. We evaluated the effects of exposure to surrogate hydraulic...
Authors
Heather S. Galbraith, Deborah D. Iwanowicz, Daniel E. Spooner, Luke R. Iwanowicz, David Keller, Paula M. Zelanko, Cynthia R. Adams

A framework for identifying and characterising coral reef “oases” against a backdrop of degradation A framework for identifying and characterising coral reef “oases” against a backdrop of degradation

Human activities have led to widespread ecological decline; however, the severity of degradation is spatially heterogeneous due to some locations resisting, escaping, or rebounding from disturbances.We developed a framework for identifying oases within coral reef regions using long‐term monitoring data. We calculated standardised estimates of coral cover (z‐scores) to distinguish sites...
Authors
James R. Guest, Peter J. Edmunds, Ruth D. Gates, Ilsa B. Kuffner, Andreas J Andersson, Brian B. Barnes, Iliana Chollett, Travis A. Courtney, Robin Elahi, Kevin Gross, Elizabeth A. Lenz, Satoshi Mitarai, Peter J. Mumby, Hannah R. Nelson, Britt A. Parker, Hollie M. Putnam, Caroline S. Rogers, Lauren Toth

Book review: A new view on the species abundance distribution Stochastic communities: A mathematical theory of biodiversity Book review: A new view on the species abundance distribution Stochastic communities: A mathematical theory of biodiversity

The sampled relative abundances of species of a taxonomic group, whether birds, trees, or moths, in a natural community at a particular place vary in a way that suggests a consistent underlying pattern, referred to as the species abundance distribution (SAD). Preston [1] conjectured that the numbers of species, plotted as a histogram of logarithmic abundance classes called octaves...
Authors
Donald L. DeAngelis

Variation in home range size and patterns in adult female American crocodiles Crocodylus acutus Variation in home range size and patterns in adult female American crocodiles Crocodylus acutus

The American crocodile Crocodylus acutus is a threatened species that uses relatively deep, open-water habitats with low salinity. Adult female American crocodiles nest on sandy coastal beaches, islands or human-made berms, assist in the hatching process, and can travel long distances to nesting habitat. We satellite-tracked 15 adult female American crocodiles in 2 hydrologically...
Authors
Kristen M. Hart, Jeffrey S. Beauchamp, Michael S. Cherkiss, Frank Mazzotti

Insular biogeographic origins and high phylogenetic distinctiveness for a recently depleted lizard fauna from Christmas Island, Australia Insular biogeographic origins and high phylogenetic distinctiveness for a recently depleted lizard fauna from Christmas Island, Australia

Striking faunal turnover across Asia and Australasia, most famously along the eastern edge of the Sunda Shelf or ‘Wallace's Line’, has been a focus of biogeographic research for over 150 years. Here, we investigate the origins of a highly threatened endemic lizard fauna (four species) on Christmas Island. Despite occurring less 350 km south of the Sunda Shelf, this fauna mostly comprises...
Authors
Paul M. Oliver, Mozes P. K. Blom, Harold G. Cogger, Robert N. Fisher, Jonathan Q. Richmond, John C. Z. Woinarski

Integrating animal movement with habitat suitability for estimating dynamic migratory connectivity Integrating animal movement with habitat suitability for estimating dynamic migratory connectivity

Context High-resolution animal movement data are becoming increasingly available, yet having a multitude of empirical trajectories alone does not allow us to easily predict animal movement. To answer ecological and evolutionary questions at a population level, quantitative estimates of a species’ potential to link patches or populations are of importance.Objectives We introduce an...
Authors
Marielle L. van Toor, Bart Kranstauber, Scott H. Newman, Diann J. Prosser, John Y. Takekawa, Georgios Technitis, Robert Weibel, Martin Wikelski, Kamran Safi

Thresholds and hotspots for shrub restoration following a heterogeneous megafire Thresholds and hotspots for shrub restoration following a heterogeneous megafire

Context Reestablishing foundational plant species through aerial seeding is an essential yet challenging step for restoring the vast semiarid landscapes impacted by plant invasions and wildfire-regime shifts. A key component of the challenge stems from landscape variability and its effects on plant recovery.Objectives We assessed landscape correlates, thresholds, and tipping points for...
Authors
Matthew Germino, David Barnard, Bill Davidson, Robert Arkle, David S. Pilliod, Matthew Fisk, Cara Applestein

Diurnal patterns of methane flux from a seasonal wetland: mechanisms and methodology Diurnal patterns of methane flux from a seasonal wetland: mechanisms and methodology

Methane emissions from wetlands are temporally dynamic. Few chamber-based studies have explored diurnal variation in methane flux with high temporal replication. Using an automated sampling system, we measured methane flux every 2.5 to 4 h for 205 diel cycles during three growing seasons (2013–2015) from a seasonal wetland in the Prairie Pothole Region of North America. During ponded...
Authors
Sheel Bansal, Brian Tangen, Raymond Finocchiaro

Dryland photoautotrophic soil surface communities endangered by global change Dryland photoautotrophic soil surface communities endangered by global change

Photoautotrophic surface communities forming biological soil crusts (biocrusts) are crucial for soil stability as well as water, nutrient and trace gas cycling at regional and global scales. Quantitative information on their global coverage and the environmental factors driving their distribution patterns, however, are not readily available. We use observations and environmental...
Authors
Emilio Rodriguez-Caballero, Jayne Belnap, Burkhard Budel, Paul J. Crutzen, Meinrat O. Andreae, Ulrich Poschl, Bettina Weber

A guide to processing bat acoustic data for the North American Bat Monitoring Program (NABat) A guide to processing bat acoustic data for the North American Bat Monitoring Program (NABat)

The North American Bat Monitoring Program (NABat) aims to improve the state of conservation science for all species of bats shared by the United States, Canada, and Mexico. To accomplish this goal, NABat offers guidance and standardized protocols for acoustic monitoring of bats. In this document, “A Guide to Processing Bat Acoustic Data for the North American Bat Monitoring Program...
Authors
Brian Reichert, Cori Lausen, Susan Loeb, Ted Weller, Ryan Allen, Eric Britzke, Tara Hohoff, Jeremy Siemers, Braden Burkholder, Carl Herzog, Michelle Verant

The complete mitochondrial genome of the stalk-forming diatom Didymosphenia geminata The complete mitochondrial genome of the stalk-forming diatom Didymosphenia geminata

The complete mitogenome of the stalk-forming diatom Didymosphenia geminata collected from Mineral County, WV, USA was sequenced on the Ion Torrent PGM and Proton sequencers. The D. geminata mitogenome is 37,765 bp and encodes 35 protein coding genes, 25 tRNAs, and both large and small subunit ribosomal RNA genes. The nad11 gene is split into two domains as observed in Phaeodactylum...
Authors
Aaron Aunins, Donald Hamilton, Tim L. King

Divergent effects of land-use, propagule pressure, and climate on woody riparian invasion Divergent effects of land-use, propagule pressure, and climate on woody riparian invasion

Landscape-scale analyses of biological invasion are needed to understand the relative importance of environmental drivers that vary at larger scales, such as climate, propagule pressure, resource availability, and human disturbance. One poorly understood landscape-scale question is, how does human land-use influence riparian plant invasion? To evaluate the relative importance of land-use...
Authors
Laura G Perry, Lindsay V. Reynolds, Patrick B. Shafroth
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