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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42871

Evolutionary and ecological correlates of thiaminase in fishes Evolutionary and ecological correlates of thiaminase in fishes

Thiamine (vitamin B1) is required by all living organisms in multiple metabolic pathways. It is scarce in natural systems, and deficiency can lead to reproductive failure, neurological issues, and death. One major cause of thiamine deficiency is an overreliance on diet items containing the enzyme thiaminase. Thiaminase activity has been noted in many prey fishes and linked to cohort...
Authors
Freya Elizabeth Rowland, Cathy A. Richter, Donald E Tillitt, David Walters

Elevation, canopy cover and grass cover structure patterns of seedling establishment in a subtropical post-fire restoration Elevation, canopy cover and grass cover structure patterns of seedling establishment in a subtropical post-fire restoration

Ecological restoration is beneficial to ecological communities in this era of large-scale landscape change and ecological disruption. However, restoration outcomes are notoriously variable, which makes fine-scale decision-making challenging. This is true for restoration efforts that follow large fires, which are increasingly common as the climate changes.Post-fire restoration efforts...
Authors
Christopher Warneke, Lars Brudvig, Makani Gregg, Sierra McDaniel, Stephanie G. Yelenik

Submersed macrophyte density regulates aquatic greenhouse gas emissions Submersed macrophyte density regulates aquatic greenhouse gas emissions

Shallow freshwater ecosystems emit large amounts of greenhouse gases (GHGs), such as carbon dioxide (CO2) and methane (CH4), yet emissions are highly variable. The role that aquatic macrophytes play in regulating aquatic GHG emissions is uncertain despite their ability to dominate shallow waterbodies. Here, we studied the effects of submersed macrophyte (Ceratophyllum demersum) density...
Authors
Meredith E. Theus, Nicholas E. Ray, Sheel Bansal, Meredith A. Holgerson

Movement behavior, habitat selection, and functional responses to habitat availability among four species of wintering waterfowl in California Movement behavior, habitat selection, and functional responses to habitat availability among four species of wintering waterfowl in California

Habitat selection analyses provide a window into the perceived value of habitats by animals and how those perceptions compare with other animals, change across time, or change in relation to availability (termed functional responses). Habitat selection analysis and functional responses can be used to develop strategies to avoid habitat limitations, guide habitat management, and set...
Authors
Cory T. Overton, Michael L. Casazza

Annual and inter-annual variability in the diffuse attenuation coefficient and turbidity in an urbanized Washington lake from 2013 to 2022 assessed using Landsat-8/9 Annual and inter-annual variability in the diffuse attenuation coefficient and turbidity in an urbanized Washington lake from 2013 to 2022 assessed using Landsat-8/9

Water clarity, defined in this study using measurements of the downwelling diffuse light attenuation coefficient (Kd) and turbidity, is an important indicator of lake trophic status and ecosystem health. We used in-situ measurements to evaluate existing semi-analytical models for Kd and turbidity, developed a regional turbidity model based on spectral shape, and evaluated the spatial and...
Authors
Jennifer A. Schulien, Tessa Julianne Code, Curtis L. DeGasperi, David Beauchamp, Arielle Tonus Ellis, Arni H. Litt

Impacts of acute and chronic suspended solids exposure on juvenile freshwater mussels Impacts of acute and chronic suspended solids exposure on juvenile freshwater mussels

Construction activities may affect adjacent water systems by introducing increased levels of suspended solids into the water body and may subsequently affect the survival and growth of freshwater mussels. We tested three sediment types from sites in Missouri, including Spring River sediment (SRS), Osage River bank clay soil (ORC), and quarried limestone from Columbia (LMT). We prepared...
Authors
Wenyu Zhu, James L. Kunz, Eric Brunson, Christopher M. Barnhart, Henry Brown, Stephen E. McMurray, Andy Roberts, Christopher Shulse, Kathleen Trauth, Bin Wang, Jeffery A. Steevens, Baolin Deng

Ammonia and aquatic ecosystems – A review of global sources, biogeochemical cycling, and effects on fish Ammonia and aquatic ecosystems – A review of global sources, biogeochemical cycling, and effects on fish

The purpose of this review is to better understand the full life cycle and influence of ammonia from an aquatic biology perspective. While ammonia has toxic properties in water and air, it also plays a central role in the biogeochemical nitrogen (N) cycle and regulates mechanisms of normal and abnormal fish physiology. Additionally, as the second most synthesized chemical on Earth...
Authors
Thea M. Edwards, Holly J. Puglis, Jonathan Lopez Duran, Lillian Bradshaw, Douglas B. Kent, Aida Farag

Climate-induced shifts in grassland bird nesting phenology have implications for grassland management Climate-induced shifts in grassland bird nesting phenology have implications for grassland management

Grasslands are among the most impacted ecosystems globally. In the midcontinent of North America, a > 80% loss of grasslands has made their conservation a major priority for resource managers. Grassland ecosystems evolved under periodic disturbances; consequently, grassland management often involves regular actions such as grazing, haying, or burning to maintain ecosystem integrity. The...
Authors
Michael J. Anteau, Kristen S. Ellis, Garrett J. MacDonald, Lawrence Igl, Neal D. Niemuth, Josh Vest

Conservation genomics of an endangered montane amphibian reveals low population structure, low genomic diversity and selection pressure from disease Conservation genomics of an endangered montane amphibian reveals low population structure, low genomic diversity and selection pressure from disease

Wildlife diseases are a major global threat to biodiversity. Boreal toads (Anaxyrus [Bufo] boreas) are a state-endangered species in the southern Rocky Mountains of Colorado and New Mexico, and a species of concern in Wyoming, largely due to lethal skin infections caused by the amphibian chytrid fungus Batrachochytrium dendrobatidis (Bd). We performed conservation and landscape genomic...
Authors
Daryl Trumbo, Bennett Hardy, Harry Crockett, Erin L. Muths, Brenna R. Forester, Rebecca Cheek, Shawna J Zimmerman, Sarah Corey-Rivas, Larissa L. Bailey, Chris Funk

An integrated framework for examining groundwater vulnerability in the Mekong River Delta region An integrated framework for examining groundwater vulnerability in the Mekong River Delta region

The Mekong River provides water, food security, and many other valuable benefits to the more than 60 million Southeast Asian residents living within its basin. However, the Mekong River Basin is increasingly stressed by changes in climate, land cover, and infrastructure. These changes can affect water quantity and quality and exacerbate related hazards such as land subsidence and...
Authors
Kathryn Powlen, Saira M. Haider, Kyle W. Davis, Nina Burkardt, Sachin D. Shah, Stephanie Romanach, Matthew E. Andersen

Seasonal and elevational differences by sex in capture rate of ʻōpeʻapeʻa (Lasiurus semotus) on Hawai‘i Island Seasonal and elevational differences by sex in capture rate of ʻōpeʻapeʻa (Lasiurus semotus) on Hawai‘i Island

The study of nocturnally active bats is difficult even for those species that seasonally congregate. This challenge is particularly acute for ‘ōpe‘ape‘a (Hawaiian hoary bat; Lasiurus semotus) because of its solitary foliage-roosting behavior. Yet surveys are essential for conservation and management of this endangered species and only land mammal endemic to the Hawaiian Islands. We...
Authors
Julia P. S. Hoeh, Aaron A. Aguirre, Flor A. Calderon, Sean P. Casler, Sarah G. Ciarrachi, Karen Courtot, Kristina Montoya-Aiona, Corinna A. Pinzari, P. Marcos Gorresen
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