Publications
This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.
Filter Total Items: 42871
White perch health relative to urbanization and habitat degradation in Chesapeake Bay tributaries. II. Hepatic and splenic macrophage aggregates White perch health relative to urbanization and habitat degradation in Chesapeake Bay tributaries. II. Hepatic and splenic macrophage aggregates
Macrophage aggregate (MA) abundance in fish is a useful general biomarker of contaminant exposures and environmental stress. Hepatic and splenic MAs were evaluated in semi-anadromous white perch Morone americana (Gmelin, 1789) from the urbanized Severn River (S) and the more rural Choptank River (C), Chesapeake Bay. Fish were collected from different sites in the annual migratory circuit...
Authors
Vicki S. Blazer, Mark A Matsche, Erin L. Pulster
White perch health relative to urbanization and habitat degradation in Chesapeake Bay tributaries. I. Biliary neoplasms and hepatic lesions White perch health relative to urbanization and habitat degradation in Chesapeake Bay tributaries. I. Biliary neoplasms and hepatic lesions
White perch Morone americana (Gmelin, 1789) from the Chesapeake Bay (USA) watershed have a high incidence of liver disease, including neoplasms of bile duct origin. Fish collected seasonally from spring 2019 to winter 2020 from the urban Severn River and the more rural Choptank River were evaluated for hepatic lesions. Biliary hyperplasia (64.1%), neoplasms (cholangioma and...
Authors
Vicki S. Blazer, Mark A Matsche, Erin L. Pulster
Evolution of a minimal cell Evolution of a minimal cell
Possessing only essential genes, a minimal cell can reveal mechanisms and processes that are critical for the persistence and stability of life1,2. Here we report on how an engineered minimal cell3,4 contends with the forces of evolution compared with the Mycoplasma mycoides non-minimal cell from which it was synthetically derived. Mutation rates were the highest among all reported...
Authors
Roy Z. Moger-Reischer, John I. Glass, Kim S. Wise, Lijie Sun, Daniela Bittencourt, Brent K. Lehmkuhl, Donald Schoolmaster, Michael Lynch, Jay T. Lennon
SARS-CoV-2 utilization of ACE2 from different bat species allows for virus entry and replication in vitro SARS-CoV-2 utilization of ACE2 from different bat species allows for virus entry and replication in vitro
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is believed to have a zoonotic origin with bats suspected as a natural host. In this work, we individually express the ACE2 of seven bat species including, little brown, great roundleaf, Pearson's horseshoe, greater horseshoe, Brazilian free-tailed, Egyptian rousette, and Chinese rufous horseshoe in DF1 cells and determine...
Authors
Kelsey Briggs, Ryan Sweeney, David S. Blehert, Erica Spackman, David L. Suarez, Darrel Kapczynski
Identifying invertebrate indicators for streamflow duration assessments in forested headwater streams Identifying invertebrate indicators for streamflow duration assessments in forested headwater streams
Streamflow-duration assessment methods (SDAMs) are rapid, indicator-based tools for classifying streamflow duration (e.g., intermittent vs perennial flow) at the reach scale. Indicators are easily assessed stream properties used as surrogates of flow duration, which is too resource intensive to measure directly for many reaches. Invertebrates are commonly used as SDAM indicators because...
Authors
Ken M. Fritz, Roxolana O. Kashuba, Gregory J. Pond, Jay R. Christensen, Laurie C. Alexander, Benjamin J. Washington, Brent R. Johnson, David Walters, William T. Thoeny, Paul C. Weaver
Estimating proximity effects to wildfire fuels treatments on house prices in Cibola National Forest, New Mexico, USA Estimating proximity effects to wildfire fuels treatments on house prices in Cibola National Forest, New Mexico, USA
Forested landscapes in the Western United States are subject to growing size and severity of wildfires, in part due to historical management strategies focusing on wildfire suppression. Forest restoration treatments and fuels reductions, including thinning and prescribed burning, can reduce the frequency and intensity of wildfires. Extensive restoration and fuels treatment efforts are...
Authors
Ryan A. Fitch, Julie M. Mueller, James R. Meldrum, Christopher Huber
Global assessment of marine plastic exposure for oceanic birds Global assessment of marine plastic exposure for oceanic birds
Plastic pollution is distributed patchily around the world’s oceans. Likewise, marine organisms that are vulnerable to plastic ingestion or entanglement have uneven distributions. Understanding where wildlife encounters plastic is crucial for targeting research and mitigation. Oceanic seabirds, particularly petrels, frequently ingest plastic, are highly threatened, and cover vast...
Authors
Bethany L. Clark, Ana P. B. Carneiro, Elizabeth J. Pearmin, Marie-Morgane Rouyer, Thomas A Clay, Win Cowger, Richard A. Phillips, Andrea Manica, Carolina Hazin, Marcus Eriksen, Jacob Gonzalez-Solis, Josh Adams, Yuri V. Albores-Barajas, Joanna Alfaro-Shigueto, Maria Saldhanha Alho, Deusa Teixeira Araujo, Jose Manuel Arcos, John P. Y. Arnould, Nadito J. P. Barbosa, Christophe Barbraud, Annalea M. Beard, Jessie Beck, Elizabeth Bell, Della G. Bennet, Maud Berlincourt, Manuel Biscoito, Oskar K. Bjornstad, Mark Bolton, Katherine A. Booth Jones, John J. Borg, Karen Bourgeois, Vincent Bretagnolle, Joel Bried, James V. Briskie, M. de L. Brooke, Katherine C. Brownlie, Leandro Bugoni, Licia Calabrese, Letizia Campioni, Mark J. Carey, Ryan D. Carle, Nicholas Carlile, Ana R. Carreiro, Paulo Catry, Teresa Catry, Jacopo G. Cecere, Filipe R. Ceia, Yves Cherel, Chang-Yong Choi, Marco Cianchetti-Benedetti, Rohan H. Clarke, Jaimie Cleeland, Valentina Colodro, Bradley C. Congdon, Johannis Danielsen, Federico De Pascalis, Zoe Deakin, Nina Dehnhard, Giacomo Dell’Omo, Karine Delord, Sebastien Descamps, Ben J. Dilley, Herculano A. Dinis, Jerome Dubos, Brendon J. Dunphy, Louise M. Emmerson, Ana Isabel Fagundes, Annette L. Fayet, Jonathan J. Felis, Johannes H. Fischer, Amanda Freeman, Aymeric Fromant, Giorgia Gaibani, David Garcia, Carina Gjerdrum, Ivandra Soeli Goncalves Correia Gomes, Manuela G. Forero, Jose Pedro Granadeiro, W. James Grecian, David Gremillet, Tim Guilford, Gunnar Thor Hallgrimsson, Luke R. Halpin, Erpur Snaer Hansen, April Hedd, Morten Helberg, Halfdan H. Helgason, Leeann M. Henry, Hannah F. R. Hereward, Marcos Hernandez-Montero, Mark A. Hindell, Peter J. Hodum, Simona Imperio, Audrey Jaeger, Mark Jessopp, Patrick G.R. Jodice, Carl G. Jones, Christopher W. Jones, Jon Einar Jonsson, Adam Kane, Sven Kapelj, Yuna Kim, Holly Kirk, Yann Kolbeinsson, Philipp L. Kraemer, Lucas Kruger, Paulo Lago, Todd J. Landers, Jennifer L. Lavers, Matthieu Le Corre, Andreia Leal, Maite Louzao, Jeremy Madeiros, Maria Magalhaes, Mark L. Mallory, Juan F. Masello, Bruno Massa, Sakiko Matsumoto, Fiona McDuie, Laura McFarlane Tranquilla, Fernando Medrano, Benjamin J. Metzger, Teresa Militao, William A. Montevecchi, Rosalinda C. Montone, Leia Navarro-Herrero, Veronica C. Neves, David G. Nicholls, Malcolm A. C. Nicoll, Ken Norris, Steffen Oppel, Daniel Oro, Ellie Owen, Oliver Padget, Vitor H. Paiva, David Pala, Jorge M. Pereira, Clara Peron, Maria V. Petry, Admilton de Pina, Ariete T. Moreira Pina, Patrick Pinet, Pierre A. Pistorius, Ingrid L. Pollet, Benjamin J. Porter, Timothee A. Poupart, Christopher D. L. Powell, Carolina B. Proano, Julia Pujol-Casado, Petra Quillfeldt, John L. Quinn, Andre F. Raine, Helen Raine, Iván Ramírez, Jaime A. Ramos, Raul Ramos, Andreas Ravache, Matt J. Rayner, Timothy A. Reid, Gregory J. Robertson, Gerard J. Rocamora, Dominic P. Rollinson, Robert A. Ronconi, Andreu Rotger, Diego Rubolini, Kevin Ruhomaun, Asuncion Ruiz, James C. Russell, Peter G. Ryan, Sarah Saldanha, Ana Sanz-Aguilar, Mariona Sarda-Serra, Yvan G. Satge, Katsufumi Sato, Wiebke C. Schafer, Stefan Schoombie, Scott A. Shaffer, Nirmal Jivan Shah, Akiko Shoji, Dave Shutler, Ingvar A. Sigurdsson, Monica C. Silva, Alison E. Small, Cecilia Soldatini, Hallvard Strom, Christopher A. Surman, Akinori Takahashi, Vikash R. V. Tatayah, Graeme A. Taylor, Robert J. Thomas, David R. Thompson, Paul M. Thompson, Thorkell L. Thorarinsson, Diego Vicente-Sastre, Eric Vidal, Ewan D. Wakefield, Susan M. Waugh, Henri Weimerskirch, Heiko U. Wittmer, Takashi Yamamoto, Ken Yoda, Carlos B. Zavalaga, Francis J. Zino, Maria P. Dias
Seasonal habitat utilization provides evidence for site fidelity during both spawn and non-spawning seasons in Lake Ontario cisco Coregonus artedi Seasonal habitat utilization provides evidence for site fidelity during both spawn and non-spawning seasons in Lake Ontario cisco Coregonus artedi
The Lake Ontario cisco Coregonus artedi population declined in the 20th century, and restoration of this species is a management objective. Management tools to restore cisco are limited because little is known about cisco spawning behavior and habitat use. We tagged 76 cisco from a remnant population in Chaumont Bay, Lake Ontario with acoustic transmitters and characterized seasonal...
Authors
Alexander J. Gatch, Dimitry Gorsky, Brian Weidel, Zy F. Biesinger, Michael J. Connerton, Cameron Davis, Hannah Lachance, Brian O’Malley
Presence of hummock and hollow microtopography reflects shifting balances of shallow subsidence and root zone expansion along forested wetland river gradients Presence of hummock and hollow microtopography reflects shifting balances of shallow subsidence and root zone expansion along forested wetland river gradients
Tidal freshwater forested wetlands (TFFWs) are in an active phase of transition to tidal marsh with sea level rise and salinity incursion along the Atlantic and Gulf Coasts of the United States (U.S.). A prominent feature of TFFWs is hummock/hollow microtopography where hollows represent the flat, base-elevation of the floodplain where inundation occurs relatively frequently, while...
Authors
Ken Krauss, Gregory E. Noe, Jamie A. Duberstein, Nicole Cormier, Andrew From, Thomas Rossiter Doody, William H. Conner, Donald R. Cahoon, Darren Johnson
Validation of a species-specific probe-based qPCR assay for the threatened meltwater stonefly, Lednia tumana, in environmental samples Validation of a species-specific probe-based qPCR assay for the threatened meltwater stonefly, Lednia tumana, in environmental samples
A probe-based quantitative real-time PCR assay was developed to detect meltwater stonefly (Lednia tumana) environmental (e)DNA in water samples. The limits of detection and quantification, respectively, were 12.1 and 58.4 gene copies for calibration standards and these values were similarly low in a relevant environmental sample matrix (8.6 and 174.2, respectively). The assay’s utility...
Authors
Patrick Ross Hutchins, Jonathan Giersch, Adam Sepulveda, Clint C. Muhlfeld
Development of a quantitative PCR assay for detecting northwest salamander (ambystoma gracile) in environmental DNA samples Development of a quantitative PCR assay for detecting northwest salamander (ambystoma gracile) in environmental DNA samples
We developed a primer and probe based quantitative PCR assay for use with environmental DNA to detect Northwest salamander (Ambystoma gracile), a species endemic to the temperate Pacific coastal region of North America. The assay targets a region in the mitochondrial DNA (mtDNA) D-loop gene. Tests of the assay were performed in silico (using the NCBI BLAST tool), in vitro (using DNA...
Authors
Marshal S. Hoy, Carl O. Ostberg
Managing an ongoing threat: Bats and white-nose syndrome Managing an ongoing threat: Bats and white-nose syndrome
No abstract available.
Authors
Tricia Lynn Fry, Amy Haeseler, Anne Ballmann, Tonie E. Rocke