Publications
This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.
Filter Total Items: 42715
State of Lake Superior ecosystem in 2017 State of Lake Superior ecosystem in 2017
This report describes the status of fish species and their habitat in Lake Superior during the reporting period of 2012-2016 in response to achievement of fish community objectives (FCOs) established by fishery managers for the lake. The overarching goal for the FCOs continued to be met as the fish community remained diverse, self-regulating, dominated by indigenous species, and able to...
Authors
Bryan G. Matthias, Thomas R. Hrabik, Joel C. Hoffman, Owen Gorman, Mike J Seider, Michael E. Sierszen, Mark Vinson, Daniel L. Yule, Peder M. Yurista
Analytical validation of two RT-qPCR tests and detection of spring viremia of carp virus (SVCV) in persistently infected koi Cyprinus carpio Analytical validation of two RT-qPCR tests and detection of spring viremia of carp virus (SVCV) in persistently infected koi Cyprinus carpio
Spring viremia of carp virus (SVCV) ia a carp sprivivirus and a member of the genus Sprivivirus within the family Rhabdoviridae. The virus is the etiological agent of spring viremia of carp, a disease of cyprinid species including koi Cyprinus carpio L. and notifiable to the World Organisation for Animal Health. The goal of this study was to explore hypotheses regarding inter-genogroup...
Authors
Sharon C Clouthier, Tamara Schroeder, Emma K Bueren, Eric D. Anderson, Eveline Emmenegger
Implications of historical and contemporary processes on genetic differentiation of a declining boreal songbird: The rusty blackbird Implications of historical and contemporary processes on genetic differentiation of a declining boreal songbird: The rusty blackbird
The arrangement of habitat features via historical or contemporary events can strongly influence genomic and demographic connectivity, and in turn affect levels of genetic diversity and resilience of populations to environmental perturbation. The rusty blackbird (Euphagus carolinus) is a forested wetland habitat specialist whose population size has declined sharply (78%) over recent...
Authors
Robert E. Wilson, Steven M. Matsuoka, Luke L. Powell, James A. Johnson, Dean W. Demarest, Diana Stralberg, Sarah A. Sonsthagen
Accommodating the role of site memory in dynamic species distribution models Accommodating the role of site memory in dynamic species distribution models
First-order dynamic occupancy models (FODOMs) are a class of state-space model in which the true state (occurrence) is observed imperfectly. An important assumption of FODOMs is that site dynamics only depend on the current state and that variations in dynamic processes are adequately captured with covariates or random effects. However, it is often difficult to understand and/or measure...
Authors
Graziella Vittoria DiRenzo, David A. W. Miller, Blake R. Hossack, Brent H. Sigafus, Paige E. Howell, Erin L. Muths, Evan H. Campbell Grant
Elk migration influences the risk of disease spillover in the Greater Yellowstone Ecosystem Elk migration influences the risk of disease spillover in the Greater Yellowstone Ecosystem
Wildlife migrations provide important ecosystem services, but they are declining. Within the Greater Yellowstone Ecosystem (GYE) some elk (Cervus canadensis) herds are losing migratory tendencies, which may increase spatiotemporal overlap between elk and livestock (domestic bison [Bison bison] and cattle [Bos taurus]), potentially exacerbating pathogen transmission risk.We combined...
Authors
Nathaniel D. Rayl, Jerod Merkle, Kelly Proffitt, E. S. Almberg, Jennifer D. Jones, Justin Gude, Paul C. Cross
Animal reservoirs and hosts for emerging alphacoronaviruses and betacoronaviruses Animal reservoirs and hosts for emerging alphacoronaviruses and betacoronaviruses
The ongoing global pandemic caused by coronavirus disease has once again demonstrated the role of the family Coronaviridae in causing human disease outbreaks. Because severe acute respiratory syndrome coronavirus 2 was first detected in December 2019, information on its tropism, host range, and clinical manifestations in animals is limited. Given the limited information, data from other
Authors
Ria R. Ghai, Ann Carpenter, Amanda Y. Liew, Krystalyn B. Martin, Meghan K. Herring, Susan I. Gerber, Aron J. Hall, Jonathan M. Sleeman, Sophie VonDobschuetz, Casey Barton Behravesh
Epizootic plague in prairie dogs: Correlates and control with deltamethrin Epizootic plague in prairie dogs: Correlates and control with deltamethrin
The plague bacterium, Yersinia pestis, is a generalist pathogen of flea (Siphonaptera) vectors and mammalian hosts. In colonies of prairie dogs (PDs, Cynomys spp.), Y. pestis causes occasional epizootics, killing ≥90% of PDs within weeks to several months. We evaluated the effectiveness of deltamethrin, a pyrethroid insecticide, as a tool for preventing plague epizootics among three PD...
Authors
Dean E. Biggins, Jerry L. Godbey, David A. Eads
Fish Rhabdoviruses (Rhabdoviridae) Fish Rhabdoviruses (Rhabdoviridae)
The family Rhabdoviridae currently has 18 genera accepted by the International Committee for Virus Taxonomy (ICTV), and three of those genera contain fish rhabdoviruses. In the genera Novirhabdovirus, Sprivivirus, and Perhabdovirus all viruses infect fish hosts, and there are no fish viruses in any of the other 15 rhabdovirus genera. In the overall phylogeny of the Rhabdoviridae the...
Authors
Gael Kurath, David B. Stone
Broadening the ecology of fear: Non-lethal effects arise from diverse responses to predation and parasitism Broadening the ecology of fear: Non-lethal effects arise from diverse responses to predation and parasitism
Research on the ‘ecology of fear’ posits that defensive prey responses to avoid predation can cause non-lethal effects across ecological scales. Parasites also elicit defensive responses in hosts with associated non-lethal effects, which raises the longstanding, yet unresolved question of how non-lethal effects of parasites compare with those of predators. We developed a framework for
Authors
D R Daversa, Ryan F. Hechinger, E Madin, A Fenton, A I Dell, E G Ritchie, Timothy J. Rohrbacher, V H W Rudolf, Kevin D. Lafferty
Co-transport of biogenic nano-hydroxyapatite and Pb(II) in saturated sand columns: Controlling factors and stochastic modeling Co-transport of biogenic nano-hydroxyapatite and Pb(II) in saturated sand columns: Controlling factors and stochastic modeling
Biogenic nano-hydroxyapatite (bio-nHAP) has recently gained great interest in many domains, especially in the remediation of heavy metal-contaminated soil, due to its high reactivity, low cost, and eco-friendly nature. The co-transport and reaction of bio-nHAP with Pb(II) in saturated porous media, however, are not well understood. This work investigated the effects of ionic strength (IS...
Authors
Dongbao Zhou, Xuan Han, Yong Zhang, Wei Wei, Christopher Green, HongGuang Sun, Chunmiao Zheng
Long-term carbon sinks in marsh soils of coastal Louisiana are at risk to wetland loss Long-term carbon sinks in marsh soils of coastal Louisiana are at risk to wetland loss
Coastal marshes are essential habitats for soil carbon accumulation and burial, which can influence the global carbon budget. Coastal Louisiana has extensive marsh habitats (fresh, intermediate, brackish, and saline) where soil cores were collected to a depth of 100 cm at 24 sites to assess long-term carbon accumulation and burial rates. Select soil depth intervals were analyzed for bulk...
Authors
Melissa M. Baustian, Camille Stagg, Carey L. Perry, Leland C. Moss, Tim J. B. Carruthers