Publications
This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.
Filter Total Items: 42871
Genetic tagging in the Anthropocene: Scaling ecology from alleles to ecosystems Genetic tagging in the Anthropocene: Scaling ecology from alleles to ecosystems
The Anthropocene is an era of marked human impact on the world. Quantifying these impacts 51 has become central to understanding the dynamics of coupled human-natural systems, resource52 dependent livelihoods, and biodiversity conservation. Ecologists are facing growing pressure to 53 quantify the size, distribution, and trajectory of wild populations in a cost-effective and socially54...
Authors
Clayton T. Lamb, Adam T Ford, Michael Proctor, J. Andrew Royle, Garth Mowat
Effect of amphibian chytrid fungus (Batrachochytrium dendrobatidis) on apparent survival of frogs and toads in the western USA Effect of amphibian chytrid fungus (Batrachochytrium dendrobatidis) on apparent survival of frogs and toads in the western USA
Despite increasing interest in determining the population-level effects of emerging infectious diseases on wildlife, estimating effects of disease on survival rates remains difficult. Even for a well-studied disease such as amphibian chytridiomycosis (caused by the fungus Batrachochytrium dendrobatidis [Bd]), there are few estimates of how survival of wild hosts is affected. We applied
Authors
Robin E. Russell, Brian J. Halstead, Brittany Mosher, Erin L. Muths, Michael J. Adams, Evan H. Campbell Grant, Robert N. Fisher, Patrick M. Kleeman, Adam R. Backlin, Christopher Pearl, R. Ken Honeycutt, Blake R. Hossack
Habitat preference modulates trans-oceanic dispersal in a terrestrial vertebrate Habitat preference modulates trans-oceanic dispersal in a terrestrial vertebrate
The importance of long-distance dispersal (LDD) in shaping geographical distributions has been debated since the nineteenth century. In terrestrial vertebrates, LDD events across large water bodies are considered highly improbable, but organismal traits affecting dispersal capacity are generally not taken into account. Here, we focus on a recent lizard radiation and combine a summary...
Authors
Mozes P.K. Blom, Nicholas J Matzke, Jason G Bragg, Evy Arida, Christopher C. Austin, Adam R. Backlin, Miguel A Carretero, Robert N. Fisher, Frank Glaw, Stacie A. Hathaway, Djoko T Iskandar, Jimmy A. McGuire, Benjamin R. Karin, Sean B Reilly, Eric N Rittmeyer, Sara Rocha, Mickael Sanchez, Alexander L. Stubbs, Miguel Vences, Craig Moritz
The development and delivery of species distribution models to inform decision-making The development and delivery of species distribution models to inform decision-making
Information on where species occur is central to conservation and management decisions, but knowledge of distributions can be coarse or incomplete. Species distribution models provide a tool for mapping suitable habitat, and can produce credible, defensible, and repeatable predictive information with which to inform decisions. However, these models are sensitive to data inputs and...
Authors
Helen Sofaer, Catherine S. Jarnevich, Ian S. Pearse, Regan L Smyth, Stephanie Auer, Cook Gericke L, Thomas C. Edwards, Gerald F. Guala, Timothy G Howard, Jeffrey T. Morisette, Healy Hamilton
Distribution of adult Chinook salmon (Oncorhynchus tshawytscha) in relation to water temperatures, Lake Scanewa, Cowlitz River, Washington, 2012 Distribution of adult Chinook salmon (Oncorhynchus tshawytscha) in relation to water temperatures, Lake Scanewa, Cowlitz River, Washington, 2012
A trap-and-haul program is operated to move anadromous Pacific salmon (Oncorhynchus spp.) around dams and reservoirs in the Cowlitz River basin, Washington. The primary release site for adult fish is in Lake Scanewa, a small reservoir created by Cowlitz Falls Dam, the uppermost dam in the basin. Releases in the reservoir are terminated when reservoir water temperature is 16 degrees...
Authors
Tobias J. Kock, Brian K. Ekstrom, Theresa L. Liedtke
Contemporary human impacts on alpine ecosystems: the direct and indirect effects of human-induced climate change and land use Contemporary human impacts on alpine ecosystems: the direct and indirect effects of human-induced climate change and land use
Alpine ecosystems account for ca. 3 % of terrestrial habitats yet, along with adjacent mountain systems, provide water resources to nearly half of the world’s human population. Approximately 20 % of humans live in or near mountain areas, making it inherently important to understand current impacts on these systems. Here, I review literature regarding current and projected human impacts...
Authors
Daniel E. Winkler
Integrating amphibian movement studies across scales better informs conservation decisions Integrating amphibian movement studies across scales better informs conservation decisions
Numerous papers have highlighted the need to integrate amphibian research and conservation across multiple scales. Despite this, most amphibian movement studies focus on a single level of organization (e.g., local population) and a single life stage (e.g., adults) and many suggest potential conservation actions or imply that the information is useful to conservation, yet these...
Authors
Larissa L. Bailey, Erin L. Muths
Local niche differences predict genotype associations in sister taxa of desert tortoise Local niche differences predict genotype associations in sister taxa of desert tortoise
Aims To investigate spatial congruence between ecological niches and genotype in two allopatric species of desert tortoise that are species of conservation concern. Location Mojave and Sonoran Desert ecoregions; California, Nevada, Arizona, Utah, USA. Methods We compare ecological niches of Gopherus agassizii and Gopherus morafkai using species distribution modelling (SDM) and then...
Authors
Richard D. Inman, A. Stewart Fotheringham, Janet Franklin, Todd Esque, Taylor Edwards, Kenneth Nussear
Is there convergence of gut microbes in blood-feeding vertebrates? Is there convergence of gut microbes in blood-feeding vertebrates?
Animal microbiomes play an important role in dietary adaptation, yet the extent to which microbiome changes exhibit parallel evolution is unclear. Of particular interest is an adaptation to extreme diets, such as blood, which poses special challenges in its content of proteins and lack of essential nutrients. In this study, we assessed taxonomic signatures (by 16S rRNA amplicon profiling...
Authors
Jin Song, Jon G Sanders, Daniel T Baldassarre, Jaime A Chaves, Nicholas S. Johnson, Antoinette J. Piaggio, Matthew J Stuckey, Eva Novakova, Jessica L Metcalf, Bruno B Chomel, Alvaro Aguilar-Setien, Rob Knight, Valerie J. McKenzie
Energy depletion and stress levels of Sockeye Salmon migrating at the northern edge of their distribution Energy depletion and stress levels of Sockeye Salmon migrating at the northern edge of their distribution
The physiological challenge for anadromous fish to migrate upriver is influenced by river temperature, but the impacts of river temperature can be difficult to predict due to an incomplete understanding of how temperature influences migration costs, especially in high‐latitude (>60°N) ecosystems. To assess temperature influences on migrating Pacific salmon Oncorhynchus spp., we measured...
Authors
Michael P. Carey, Kevin D. Keith, Merlyn Schelske, Charlie Lean, Stephen D. McCormick, Amy M. Regish, Christian E. Zimmerman
Coast to coast: High genomic connectivity in North American scoters Coast to coast: High genomic connectivity in North American scoters
Dispersal shapes demographic processes and therefore is fundamental to understanding biological, ecological, and evolutionary processes acting within populations. However, assessing population connectivity in scoters (Melanitta sp.) is challenging as these species have large spatial distributions that span remote landscapes, have varying nesting distributions (disjunct vs. continuous)...
Authors
Sarah A. Sonsthagen, Robert E. Wilson, Philip Lavretsky, Sandra L. Talbot
Ecological effects of fear: How spatiotemporal heterogeneity in predation risk influences mule deer access to forage in a sky‐island system Ecological effects of fear: How spatiotemporal heterogeneity in predation risk influences mule deer access to forage in a sky‐island system
Forage availability and predation risk interact to affect habitat use of ungulates across many biomes. Within sky‐island habitats of the Mojave Desert, increased availability of diverse forage and cover may provide ungulates with unique opportunities to extend nutrient uptake and/or to mitigate predation risk. We addressed whether habitat use and foraging patterns of female mule deer...
Authors
Chris Lowrey, Kathleen Longshore, David M. Choate, Jyoteshwar R Nagol, Joseph O. Sexton, Daniel B. Thompson