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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42905

The presence of antibiotic resistance genes in coastal soil and sediment samples from the eastern seaboard of the USA The presence of antibiotic resistance genes in coastal soil and sediment samples from the eastern seaboard of the USA

Infections from antibiotic resistant microorganisms are considered to be one of the greatest global public health challenges that result in huge annual economic losses. While genes that impart resistance to antibiotics (AbR) existed long before the discovery and use of antibiotics, anthropogenic uses of antibiotics in agriculture, domesticated animals, and humans are known to influence...
Authors
Dale W. Griffin, William Benzel, Shawn C. Fisher, Michael J. Focazio, Luke R. Iwanowicz, Keith A. Loftin, Timothy J. Reilly, Daniel K. Jones

Effects of experimental removal of Barred Owls on population Demography of Northern Spotted Owls in Washington and Oregon—2018 Progress Report Effects of experimental removal of Barred Owls on population Demography of Northern Spotted Owls in Washington and Oregon—2018 Progress Report

Populations of Northern Spotted Owls (Strix occidentalis caurina; herineafter referred to as Spotted Owl) have declined throughout the subspecies’ geographic range. Evidence indicates that competition with invading Barred Owls (S. varia) has contributed significantly to those declines. A pilot study in California showed that removal of Barred Owls coupled with conservation of suitable...
Authors
J. David Wiens, Katie M. Dugger, Damon B. Lesmeister, Krista E. Dilione, David C. Simon

Spatial conservation planning under uncertainty: Adapting to climate change risks using modern portfolio theory Spatial conservation planning under uncertainty: Adapting to climate change risks using modern portfolio theory

Climate change and urban growth impact habitats, species, and ecosystem services. To buffer against global change, an established adaptation strategy is designing protected areas to increase representation and complementarity of biodiversity features. Uncertainty regarding the scale and magnitude of landscape change complicates reserve planning and exposes decision makers to risk of...
Authors
Mitchell J. Eaton, Simeon Yurek, Zulqarnain Haider, Julien Martin, Fred Johnson, Bradley Udell, Hadi Charkhgard, Changhyun Kwon

A novel host-adapted strain of Salmonella Typhimurium causes disease in olive ridley turtles (Lepidochelys olivacea) in the Pacific. A novel host-adapted strain of Salmonella Typhimurium causes disease in olive ridley turtles (Lepidochelys olivacea) in the Pacific.

Salmonella spp. are frequently shed by wildlife including turtles, but S. enterica subsp. enterica serovar Typhimurium or lesions associated with Salmonella are rare in turtles. Between 1996 and 2016, we necropsied 127 apparently healthy pelagic olive ridley turtles (Lepidochelys olivacea) that died from drowning bycatch in fisheries and 44 live or freshly dead stranded turtles from the...
Authors
Thierry M. Work, Julie Dagenais, Brian A. Stacy, Jason T. Ladner, Jeffrey M. Lorch, George H. Balazs, Elias Barquero-Calvo, Brenda M. Berlowski-Zier, Renee Breeden, Natalia Corrales-Gomez, Rocio Gonzalez-Barrientos, Heather Harris, Gabriela Hernandez-Mora, Angel Herrera-Ulloa, Shoreh Hesami, T. Todd Jones, Juan Alberto Morales, Terry M. Norton, Robert Rameyer, Daniel Taylor, Thomas B. Waltzek

Synopsis of research programs that can provide baseline and monitoring information for offshore energy activities in the Pacific region: Seabird and marine mammal surveys in the Pacific region Synopsis of research programs that can provide baseline and monitoring information for offshore energy activities in the Pacific region: Seabird and marine mammal surveys in the Pacific region

We assembled and tabulated information about marine bird and mammal research and monitoring programs that could provide data needed to support environmental risk assessments. This included identifying ongoing or completed research programs that contain information on species and habitats sensitive to offshore energy activities and that could provide baseline and monitoring data to...
Authors
Josh Adams, Kevin D. Lafferty, Emily C. Kelsey, Cora A. Johnston

Assessing the chemistry and bioavailability of dissolved organic matter from glaciers and rock glaciers Assessing the chemistry and bioavailability of dissolved organic matter from glaciers and rock glaciers

As glaciers thaw in response to warming, they release dissolved organic matter (DOM) to alpine lakes and streams. The United States contains an abundance of both alpine glaciers and rock glaciers. Differences in DOM composition and bioavailability between glacier types, like rock and ice glaciers, remain undefined. To assess differences in glacier and rock glacier DOM we evaluated...
Authors
Timothy S. Fegel, Claudia M. Boot, Corey D. Broeckling, Jill Baron, Edward K Hall

Trends and carrying capacity of sea otters in Southeast Alaska Trends and carrying capacity of sea otters in Southeast Alaska

Sea otter populations in Southeast Alaska (SEAK) have increased dramatically from fewer than 500 translocated animals in the late 1960s. The recovery of sea otters to ecosystems from which they had been absent has affected coastal food webs, including commercially important fisheries, and thus information on expected growth and equilibrium abundances can help inform resource management...
Authors
M. Tim Tinker, Verena A. Gill, George G. Esslinger, James L. Bodkin, Melissa Monk, Marc Mangel, Daniel Monson, Wendel W. Raymond, Michelle Kissling

Predicting attenuation of salinized surface- and groundwater-resources from legacy energy development in the Prairie Pothole Region Predicting attenuation of salinized surface- and groundwater-resources from legacy energy development in the Prairie Pothole Region

Oil and gas (energy) development in the Williston Basin, which partly underlies the Prairie Pothole Region in central North America, has helped meet U.S. energy demand for decades. Historical handling and disposal practices of saline wastewater co-produced during energy development resulted in salinization of surface and groundwater at numerous legacy energy sites. Thirty years of...
Authors
Todd M. Preston, Chauncey W. Anderson, Joanna N. Thamke, Blake R. Hossack, Katherine Skalak, Isabelle M. Cozzarelli

Plague positive mouse fleas on mice prior to plague outbreaks in black-tailed and white-tailed prairie dogs Plague positive mouse fleas on mice prior to plague outbreaks in black-tailed and white-tailed prairie dogs

Plague is a lethal zoonotic disease associated with rodents worldwide. In the western United States, plague outbreaks can decimate prairie dog (Cynomys spp.) colonies. However, it is unclear where the causative agent, Yersinia pestis, of this flea-borne disease is maintained between outbreaks, and what triggers plague-induced prairie dog die-offs. Less susceptible rodent hosts, such as...
Authors
Gebbiena M. Bron, Carly Malave, Jesse T. Boulerice, Jorge E. Osorio, Tonie E. Rocke

First record of the non-indigenous parasitic copepod Neoergasilus japonicus (Harada, 1950) in the Lake Ontario Watershed: Oneida Lake, New York First record of the non-indigenous parasitic copepod Neoergasilus japonicus (Harada, 1950) in the Lake Ontario Watershed: Oneida Lake, New York

Four specimens of the Asiatic parasitic copepod Neoergasilus japonicus (Harada, 1930) were collected from Oneida Lake, New York in September 2018; one specimen was from a white sucker Catostomus commersonii, another from a green sunfish Lepomis cyanellus, and two from a bluegill Lepomis macrochirus. The four adult female specimens were found attached to the base of the gills of their...
Authors
Chris C. Marshall, Patrick Hudson, J. Randy Jackson, Joe K. Connolly, Jim M Watkins, Lars G. Rudstam

Integrating behavior and physiology into strategies for amphibian conservation Integrating behavior and physiology into strategies for amphibian conservation

The amphibian decline crisis has been challenging to address because of the complexity of factors—and their multitude of interactive effects—that drive this global issue. Dissecting such complexity could benefit from strategies that integrate multiple disciplines and address the mechanistic underpinnings of population declines and extirpations. We examine how the disciplines of behavior...
Authors
Susan Walls, Caitlin R Gabor

Establishing genome sizes of focal fishery and aquaculture species along Baja California, Mexico Establishing genome sizes of focal fishery and aquaculture species along Baja California, Mexico

Genome size—the total haploid content of nuclear DNA— is constant in all cells in individuals within a species, but differs among species. Consequently, the genome size is a quantifiable genetic signature that not only characterizes a species, but it can reflect chromatin modifications, which play fundamental roles in most biological processes that are involved in the manipulation and...
Authors
Constanza del Mar Ochoa-Saloma, Jill A. Jenkins, Manuel A. Segovia, Miguel A. Del Rio-Portilla, Carmen G. Paniagua-Chavez
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