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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42700

The influence of soil resources and plant traits on invasion and restoration in a subtropical woodland The influence of soil resources and plant traits on invasion and restoration in a subtropical woodland

It has been shown in some cases that nitrogen (N) addition to soil will increase abundance of plant invaders because many invaders have traits that promote rapid growth in response to high resource supply. Similarly, it has been suggested, and sometimes shown, that decreasing soil N via carbon (C) additions can facilitate native species recovery. Yet all species are unlikely to respond...
Authors
Stephanie G. Yelenik, Carla M. D’Antonio, Elizabeth August-Schmidt

Biogeographical variation of plumage coloration in the sexually dichromatic Hawai‘i ‘Amakihi (Chlorodrepanis virens) Biogeographical variation of plumage coloration in the sexually dichromatic Hawai‘i ‘Amakihi (Chlorodrepanis virens)

Plumage coloration in birds can be of major importance to mate selection, social signaling, or predator avoidance. Variations in plumage coloration related to sex, age class, or seasons have been widely studied, but the effect of other factors such as climate is less known. In this study, we examine how carotenoid-based plumage coloration and sexual dichromatism of the Hawai‘i ‘Amakihi
Authors
Jacqueline M. Gaudioso-Levita, Patrick J. Hart, Dennis Lapointe, Anne Veillet, Esther Sebastian-Gonzalez

Coming to terms about describing Golden Eagle reproduction Coming to terms about describing Golden Eagle reproduction

Clearly defined terms are essential for reporting and understanding research findings, and inconsistent terminology can complicate efforts to compare findings from different studies. In this article, we reiterate and clarify recommended terms for describing Golden Eagle (Aquila chrysaetos) territory occupancy and reproduction. Several authors have provided recommendations for reporting...
Authors
Karen Steenhof, Michael N. Kochert, Carol L. McIntyre, Jessi L. Brown

Local adaptation in Trinidadian guppies alters stream ecosystem structure at landscape scales despite high environmental variability Local adaptation in Trinidadian guppies alters stream ecosystem structure at landscape scales despite high environmental variability

While previous studies have shown that evolutionary divergence alters ecological processes in small-scale experiments, a major challenge is to assess whether such evolutionary effects are important in natural ecosystems at larger spatial scales. At the landscape scale, across eight streams in the Caroni drainage, we found that the presence of locally adapted populations of guppies...
Authors
Troy N. Simon, Ronald D. Bassar, Andrew J. Binderup, Alex S. Flecker, Mary Freeman, James F. Gill, Michael C. Marshall, Steve A. Thomas, Joseph Travis, David N. Reznick, Catherine M. Pringle

Camera traps reveal an apparent mutualism between a common mesocarnivore and an endangered ungulate Camera traps reveal an apparent mutualism between a common mesocarnivore and an endangered ungulate

Camera traps are commonly used to study mammal ecology and they occasionally capture previously undocumented species interactions. The key deer (Odocoileus virginianus clavium) is an endangered endemic subspecies of the Florida Keys, where it exists with few predators. We obtained a camera trap sequence of 80 photos in which a key deer interacted with two northern raccoons (Procyon lotor...
Authors
Michael V. Cove, Andrew S. Maurer, Allan F. O’Connell

Do you hear what I see? Vocalization relative to visual detection rates of Hawaiian hoary bats (Lasiurus cinereus semotus) Do you hear what I see? Vocalization relative to visual detection rates of Hawaiian hoary bats (Lasiurus cinereus semotus)

Bats vocalize during flight as part of the sensory modality called echolocation, but very little is known about whether flying bats consistently call. Occasional vocal silence during flight when bats approach prey or conspecifics has been documented for relatively few species and situations. Bats flying alone in clutter-free airspace are not known to forgo vocalization, yet prior...
Authors
P. Marcos Gorresen, Paul M. Cryan, Kristina Montoya-Aiona, Frank Bonaccorso

Measuring the role of seagrasses in regulating sediment surface elevation Measuring the role of seagrasses in regulating sediment surface elevation

Seagrass meadows provide numerous ecosystem services and their rapid global loss may reduce human welfare as well as ecological integrity. In common with the other ‘blue carbon’ habitats (mangroves and tidal marshes) seagrasses are thought to provide coastal defence and encourage sediment stabilisation and surface elevation. A sophisticated understanding of sediment elevation dynamics in...
Authors
Maria Potouroglou, James C. Bull, Ken W. Krauss, Hilary A. Kennedy, Marco Fusi, Daniele Daffonchio, Mwita M. Mangora, Michael N. Githaiga, Karen Diele, Mark Huxham

Isolation and characterization of the fall Chinook aquareovirus Isolation and characterization of the fall Chinook aquareovirus

Background Salmon are paramount to the economy, ecology, and history of the Pacific Northwest. Viruses constitute one of the major threats to salmon health and well-being, with more than twenty known virus species that infect salmon. Here, we describe the isolation and characterization of the fall Chinook aquareovirus, a divergent member of the species Aquareovirus B within the family...
Authors
Negar Makhsous, Nicole L. Jensen, Katherine H. Haman, William N. Batts, Keith R. Jerome, James Winton, Alexander L. Greninger

Ancient lakes, Pleistocene climates and river avulsions structure the phylogeography of a large but little-known rock scorpion from the Mojave and Sonoran deserts Ancient lakes, Pleistocene climates and river avulsions structure the phylogeography of a large but little-known rock scorpion from the Mojave and Sonoran deserts

Recent syntheses of phylogeographical data from terrestrial animals in the Mojave and Sonoran deserts have revealed a complex history of geologic and climatic vicariance events. We studied the phylogeography of Smeringurus vachoni to see how vicariance events may have impacted a large, endemic rock scorpion. Additionally, we used the phylogeographical data to examine the validity of two...
Authors
Matthew R. Graham, Dustin A. Wood, Jonathan A. Henault, Zachary J. Valois, Paula E. Cushing

Extensive shared polymorphism at non-MHC immune genes in recently diverged North American prairie grouse Extensive shared polymorphism at non-MHC immune genes in recently diverged North American prairie grouse

Gene polymorphisms shared between recently diverged species are thought to be widespread and most commonly reflect introgression from hybridization or retention of ancestral polymorphism through incomplete lineage sorting. Shared genetic diversity resulting from incomplete lineage sorting is usually maintained for a relatively short period of time, but under strong balancing selection it...
Authors
Piotr Minias, Zachary W. Bateson, Linda A. Whittingham, Jeff A. Johnson, Sara J. Oyler-McCance, Peter O. Dunn

Facultative parasitism by the bivalve Kurtiella pedroana in the sand crab Emerita analoga Facultative parasitism by the bivalve Kurtiella pedroana in the sand crab Emerita analoga

It is rare that an organism capable of independent or commensalistic existence can also become endoparasitic on a host. In this study, we documented a potential step toward parasitism in the commensal clam Kurtiella pedroana (Bivalvia: Galeommatoidea). Galeommatoideans are known commensals of various invertebrates, including crustaceans. Emerita analoga (Decapoda: Hippidae) is an...
Authors
Ritin Bhaduri, Paul Valentich-Scott, Mark Hilgers, Rajvir Singh, Mikaila Hickman, Kevin D. Lafferty

Food abundance, prey morphology, and diet specialization influence individual sea otter tool use Food abundance, prey morphology, and diet specialization influence individual sea otter tool use

Sea otters are well-known tool users, employing objects such as rocks or shells to break open invertebrate prey. We used a series of generalized linear mixed effect models to examine observational data on prey capture and tool use from 211 tagged individuals from 5 geographically defined study areas throughout the sea otter’s range in California. Our best supported model was able to...
Authors
Jessica A. Fujii, Katherine Ralls, M. Tim Tinker
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