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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42884

Riverscape approaches in practice: Perspectives and applications Riverscape approaches in practice: Perspectives and applications

Landscape perspectives in riverine ecology have been undertaken increasingly in the last 30 years, leading aquatic ecologists to develop a diverse set of approaches for conceptualizing, mapping and understanding ‘riverscapes’. Spatiotemporally explicit perspectives of rivers and their biota nested within the socio-ecological landscape now provide guiding principles and approaches in...
Authors
Christian E. Torgersen, Celine Le Pichon, Aimee H. Fullerton, Stephen J. Dugdale, Jeffrey J. Duda, Floriane Giovannini, Evelyne Tales, Jerome Belliard, Paulo Branco, Normand E. Bergeron, Mathieu L. Roy, Diego Tonolla, Nicolas Lamouroux, Herve Capra, Colden V. Baxter

Decision-support framework for linking regional-scale management actions to continental-scale conservation of wide-ranging species Decision-support framework for linking regional-scale management actions to continental-scale conservation of wide-ranging species

Anas acuta (Northern pintail; hereafter pintail) was selected as a model species on which to base a decision-support framework linking regional actions to continental-scale population and harvest objectives. This framework was then used to engage stakeholders, such as Landscape Conservation Cooperatives’ (LCCs’) habitat management partners within areas of importance to pintails, while...
Authors
Erik E. Osnas, G. Scott Boomer, James H. Devries, Michael C. Runge

Time to get real with qPCR controls: The frequency of sample contamination and the informative power of negative controls in environmental DNA studies Time to get real with qPCR controls: The frequency of sample contamination and the informative power of negative controls in environmental DNA studies

Environmental (e)DNA methods have enabled rapid, sensitive and specific inferences of taxa presence throughout diverse fields of ecological study. However, use of eDNA results for decision-making has been impeded by uncertainties associated with false positive tests putatively caused by sporadic or systemic contamination. Sporadic contamination is a process that is inconsistent across...
Authors
Patrick Ross Hutchins, Leah Nicole Simantel, Adam Sepulveda

Morphometric sex identification of nestling and free-flying Tasmanian Wedge-tailed Eagles (Aquila audax fleayi) Morphometric sex identification of nestling and free-flying Tasmanian Wedge-tailed Eagles (Aquila audax fleayi)

The endangered Tasmanian Wedge-tailed Eagle (Aquila audax fleayi) is the focus of continued research and conservation efforts. A tool for accurate and efficient identification of the sex of individuals would be a valuable aid to research and management. However, plumages are monomorphic between the sexes, making sex identification difficult without molecular analyses. Our aim was to...
Authors
James M. Pay, Todd E. Katzner, Jason M Wiersma, William E. Brown, Clare E. Hawkins, Kirstin M Proft, Elissa Z. Cameron

U.S. Geological Survey invasive species research—Improving detection, awareness, decision support, and control U.S. Geological Survey invasive species research—Improving detection, awareness, decision support, and control

More than 6,500 nonindigenous species are now established in the United States, posing risks to human and wildlife health, native plants and animals, and our valued ecosystems. The annual environmental, economic, and health-related costs of invasive species are substantial. Invasive species can drive native species onto the endangered species list, resulting in associated regulatory...
Authors
Cindy Kolar Tam, Wesley M. Daniel, Earl Campbell, James J. English, Suzanna C. Soileau

Setting and tracking suppression targets for sea lampreys in the Great Lakes Setting and tracking suppression targets for sea lampreys in the Great Lakes

In response to invasive species, the course of action taken by management agencies often evolves over a range of options from a do-nothing approach to suppression to complete eradication. As a case study of suppression targets, we explore the history of approaches used by the Great Lakes Fishery Commission in response to the invasion of the Laurentian Great Lakes by sea lampreys...
Authors
Ted Treska, Mark P. Ebener, Gavin Christie, Jean V. Adams, Michael J Siefkes

Carbon and ecohydrological priorities in managing woody encroachment: UAV perspective 63 years after a control treatment Carbon and ecohydrological priorities in managing woody encroachment: UAV perspective 63 years after a control treatment

Woody encroachment, including both woody species expansion and density increase, is a globally observed phenomenon that deteriorates arid and semi-arid rangeland health, biodiversity, and ecosystem services. Mechanical and chemical control treatments are commonly performed to reduce woody cover and restore ecohydrologic function. While the immediate impacts of woody control treatments...
Authors
Temuulen T. Sankey, Jackson Leonard, Margaret Moore, Joel B. Sankey, Adam Belmonte

Effects of stocking density on stress response and susceptibility to infectious hematopoietic necrosis virus in rainbow trout Effects of stocking density on stress response and susceptibility to infectious hematopoietic necrosis virus in rainbow trout

The goals of this study were to examine the effect of stocking density on the stress response and disease susceptibility in juvenile rainbow trout (Oncorhynchus mykiss). Fish were sorted into one of 2 stocking densities (high density "HD", 20-40 kg/m3) or (low density, "LD", 4-8 kg/m3) and 3 stress indices (cortisol levels in serum and water, and neutrophil: lymphocyte (N:L) ratios from...
Authors
Jenna J Klug, Piper M Treuting, George E. Sanders, James Winton, Gael Kurath

Exposure of predatory and scavenging birds to anticoagulant rodenticides in France: Exploration of data from French surveillance programs Exposure of predatory and scavenging birds to anticoagulant rodenticides in France: Exploration of data from French surveillance programs

Wild raptors are widely used to assess exposure to different environmental contaminants, including anticoagulant rodenticides (ARs). ARs are used on a global scale for rodent control, and act by disruption of the vitamin K cycle that results in haemorrhage usually accompanied by death within days. Some ARs are highly persistent and bioaccumulative, which can cause significant exposure of...
Authors
Meg-Anne Moriceau, Sebastien Lefebvre, Isabelle Fourel, Etienne Benoit, Florence Buronfosse, Pascal Orabi, Barnett A. Rattner, Virginie Lattard

Viral-like particles are associated with endosymbiont pathology in Florida corals affected by stony coral tissue loss disease Viral-like particles are associated with endosymbiont pathology in Florida corals affected by stony coral tissue loss disease

Stony coral tissue loss disease (SCTLD) was first documented in 2014 near the Port of Miami, Florida, and has since spread north and south along Florida’s Coral Reef, killing large numbers of more than 20 species of coral and leading to the functional extinction of at least one species, Dendrogyra cylindrus. SCTLD is assumed to be caused by bacteria based on presence of different...
Authors
Thierry M. Work, Tina M. Weatherby, Jan H. Landsberg, Yasunaru Kiryu, Samantha M. Cook, Esther C. Peters

Olfactory lures in predator control do not increase predation risk to birds in areas of conservation concern Olfactory lures in predator control do not increase predation risk to birds in areas of conservation concern

Context: Lethal control of predators is often undertaken to protect species of conservation concern. Traps are frequently baited to increase capture efficacy, but baited traps can potentially increase predation risk by attracting predators to protected areas. This is especially important if targeted predators can escape capture due to low trap success. Snake traps using live mouse lures...
Authors
Page E. Klug, Amy A. Yackel Adams, Robert Reed

Distribution of tiger salamanders in northern Sonora, Mexico: Comparison of sampling methods and possible implications for an endangered subspecies Distribution of tiger salamanders in northern Sonora, Mexico: Comparison of sampling methods and possible implications for an endangered subspecies

Many aquatic species in the arid USA-Mexico borderlands region are imperiled, but limited information on distributions and threats often hinders management. To provide information on the distribution of the Western Tiger Salamander (Ambystoma mavortium), including the USA-federally endangered Sonoran Tiger Salamander (Ambystoma mavortium stebbinsi), we used traditional (seines, dip-nets)...
Authors
Blake R. Hossack, Julio A. Lemos-Espinal, Brent H. Sigafus, Erin L. Muths, Gerardo Carreon Arroyo, Daniel Toyos Martinez, David Hurtado Felix, Guillermo Molina Padilla, Caren S. Goldberg, T. R. Jones, M. J. Sredl, Thierry Chambert, J. C. Rorabaugh
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