Publications
This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.
Filter Total Items: 42730
Habitat type and structure affect trap capture success of an invasive snake across variable densities Habitat type and structure affect trap capture success of an invasive snake across variable densities
Detection represents an important limitation of accurately estimating population size, abundance, and habitat suitability for wildlife, which can be especially true for cryptic animals. Moreover, for reptiles, juveniles are often less likely to be detected than later life stages. In the case of invasive species, preventing false negatives early in the invasion process can be critical for...
Authors
Melia G. Nafus, Amy A. Yackel Adams, Page E. Klug, Gordon H. Rodda
Evaluating the relationship among wetland vertical development, elevation capital, sea-level rise and tidal marsh sustainability Evaluating the relationship among wetland vertical development, elevation capital, sea-level rise and tidal marsh sustainability
Accelerating sea-level rise and human impacts to the coast (e.g., altered sediment supply and hydrology, nutrient loading) influence the accumulation of sediment and organic matter, and thereby impact the ability of coastal tidal wetlands to maintain an elevation consistently within the vegetation growth range. Critical components of marsh sustainability are the marsh elevation within...
Authors
Donald R. Cahoon, James C. Lynch, Charles T. Roman, John Paul Schmit, Dennis E. Skidds
Integrating growth and capture–mark–recapture models reveals size‐dependent survival in an elusive species Integrating growth and capture–mark–recapture models reveals size‐dependent survival in an elusive species
Survival is a key vital rate for projecting the viability of wild populations. Estimating survival is difficult for many rare or elusive species because recapture rates of marked individuals are low, and the ultimate fate of individuals is unknown. Low recapture rates for many species have made it difficult to accurately estimate survival, and to evaluate the importance of individual and
Authors
Jonathan P. Rose, Glenn D. Wylie, Michael L. Casazza, Brian J. Halstead
Science alive and well in North American wildlife management Science alive and well in North American wildlife management
Artelle et al. (1) entitled a recent article with the provocative claim: “Hallmarks of science missing from North American wildlife management”. Although we agree with some of the concerns and recommendations of Artelle et al. (1), we believe that the article is misleading about the distinction between science and management, the role of science in wise management, and the degree to...
Authors
James D. Nichols, Fred A. Johnson, Byron K. Williams, G. Scott Boomer
Insight into infectious hematopoietic necrosis virus (IHNV) in Chinese rainbow trout aquaculture from virus isolated from 7 provinces in 2010–2014 Insight into infectious hematopoietic necrosis virus (IHNV) in Chinese rainbow trout aquaculture from virus isolated from 7 provinces in 2010–2014
The aquatic rhabdovirus infectious hematopoietic necrosis virus (IHNV) currently causes substantial fish losses in Chinese coldwater aquaculture. While IHNV was first reported in China in 1985 and has since undergone considerable spread, little is known about the underlying epidemiological patterns like introduction sources and transmission routes. In this study, we examined...
Authors
Peng Jia, Rachel B. Breyta, Qing Li, Xu Qian, Bing Wu, Wei Zheng, Zhiqing Wen, Ying Liu, Gael Kurath, Qunyi Hua, Ningyi Jin, Hong Liu
Responses of hatchery‐ and natural‐origin adult spring Chinook Salmon to a trap‐and‐haul reintroduction program Responses of hatchery‐ and natural‐origin adult spring Chinook Salmon to a trap‐and‐haul reintroduction program
The construction of impassable dams severely affected many Pacific salmon Oncorhynchus spp. populations, resulting in reintroduction efforts that are now focused on returning anadromous fish to areas located upstream of these dams. A primary strategy for moving adult salmon and steelhead O. mykiss around a dam or multiple dams involves trapping fish downstream and transporting them to...
Authors
Tobias J. Kock, Russell W. Perry, Adam C. Pope, John D. Serl, Mike Kohn, Theresa L. Liedtke
Flyway structure in the circumpolar greater white‐fronted goose Flyway structure in the circumpolar greater white‐fronted goose
Dispersal and migratory behavior are influential factors in determining how genetic diversity is distributed across the landscape. In migratory species, genetic structure can be promoted via several mechanisms including fidelity to distinct migratory routes. Particularly within North America, waterfowl management units have been delineated according to distinct longitudinal migratory...
Authors
Robert E. Wilson, Craig R. Ely, Sandra L. Talbot
A transcriptome resource for the Arctic Cod (Boreogadus saida) A transcriptome resource for the Arctic Cod (Boreogadus saida)
Arctic Cod (Boreogadus saida) serve as an important link in Arctic food webs and are thus considered an important species for environmental monitoring. RNA-Seq was conducted on samples from wild-collected individuals representing various age classes and tissue types to obtain as complete a transcriptome as possible on an Illumina MiSeq, which resulted in a total of 64,457 transcripts...
Authors
Robert E. Wilson, Damian M. Menning, Kate Wedemeyer, Sandra L. Talbot
Evaluating the waterfowl breeding population and habitat survey for scaup Evaluating the waterfowl breeding population and habitat survey for scaup
Potential bias in breeding population estimates of certain duck species from the Waterfowl Breeding Population and Habitat Survey (WBPHS) has been a concern for decades. The WBPHS does not differentiate between lesser (Aythya affinis) and greater (A. marila) scaup, but lesser scaup comprise 89% of the combined scaup population and their population estimates are suspected to be biased. We...
Authors
Michael L. Schummer, Alan D. Afton, Shannon S. Badzinski, Scott A. Petrie, Glenn H. Olsen, Mark A. Mitchell
Flow-mediated effects on travel time, routing, and survival of juvenile Chinook salmon in a spatially complex, tidally forced river delta Flow-mediated effects on travel time, routing, and survival of juvenile Chinook salmon in a spatially complex, tidally forced river delta
We evaluated the interacting influences of river flows and tides on travel time, routing, and survival of juvenile late-fall Chinook salmon (Oncorhynchus tshawytscha) migrating through the Sacramento–San Joaquin River Delta. To quantify these effects, we jointly modeled the travel time, survival, and migration routing in relation to individual time-varying covariates of acoustic-tagged...
Authors
Russell W. Perry, Adam C. Pope, Jason G. Romine, Patricia L. Brandes, Jon R. Burau, Aaron R. Blake, Arnold J. Ammann, Cyril J. Michel
Estimating distemper virus dynamics among wolves and grizzly bears using serology and Bayesian state‐space models Estimating distemper virus dynamics among wolves and grizzly bears using serology and Bayesian state‐space models
Many parasites infect multiple hosts, but estimating the transmission across host species remains a key challenge in disease ecology. We investigated the within and across host species dynamics of canine distemper virus (CDV) in grizzly bears (Ursus arctos) and wolves (Canis lupus) of the Greater Yellowstone Ecosystem (GYE). We hypothesized that grizzly bears may be more likely to be...
Authors
Paul C. Cross, Frank T. van Manen, Mafalda Viana, Emily S. Almberg, Daniel Bachen, Ellen E. Brandell, Mark A. Haroldson, Peter J. Hudson, Daniel R. Stahler, Douglas W. Smith
Moving from generalisations to specificity about mangrove-saltmarsh dynamics Moving from generalisations to specificity about mangrove-saltmarsh dynamics
Spatial and temporal variability in factors influencing mangrove establishment and survival affects the distribution of mangrove, particularly near their latitudinal limit, where mangrove expansion into saltmarsh is conspicuous. In this paper the spatial variability in mangrove distribution and variability in factors influencing mangrove establishment and survival during the Quaternary...
Authors
Kerrylee Rogers, Ken W. Krauss