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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42768

Holy flux: Spatial and temporal variation in massive pulses of emerging insect biomass from western U.S. rivers Holy flux: Spatial and temporal variation in massive pulses of emerging insect biomass from western U.S. rivers

The river stonefly, Pteronarcys californica (aka salmonfly), is an iconic insect in rivers of western North America due to its large size and its support of economically important species like wild trout (Nehring et al. 2011). Their emergence generates a large economic subsidy to local communities, as anglers from around the world travel to western rivers to fish the salmonfly “hatch” (e...
Authors
David Walters, Jeff S. Wesner, Robert E. Zuellig, Dan A. Kowalski, Matt C. Kondratieff

Bioenergetic evaluation of diel vertical migration by bull trout (Salvelinus confluentus) in a thermally stratified reservoir Bioenergetic evaluation of diel vertical migration by bull trout (Salvelinus confluentus) in a thermally stratified reservoir

Many species living in deeper lentic ecosystems exhibit daily movements that cycle through the water column, generally referred to as diel vertical migration (DVM). In this study, we applied bioenergetics modelling to evaluate growth as a hypothesis to explain DVM by bull trout (Salvelinus confluentus) in a thermally stratified reservoir (Ross Lake, WA, USA) during the peak of thermal
Authors
Madeleine Eckmann, Jason B. Dunham, Edward J. Connor, Carmen A. Welch

The Southern Appalachian Brook Trout management conundrum: What should restoration look like in the 21st Century? The Southern Appalachian Brook Trout management conundrum: What should restoration look like in the 21st Century?

Brook Trout Salvelinus fontinalis in the southern Appalachian portion of their range have been isolated in remote headwater systems for millennia. Recent genetic investigations indicate extremely low allelic diversity, heterozygosity and effective population sizes in many streams. In populations restored using multiple source stocks, limited introgression has been observed despite source...
Authors
Matt A. Kulp, Shawna Mitchell, David C. Kazyak, Bernard R. Kuhajda, Jason Henegar, T. Casey Weathers, Anna George, Joshua R. Ennen, Tim King

Characterization of microsatellite loci for the Gulf Coast waterdog (Necturus beyeri) using paired-end Illumina shotgun sequencing and cross-amplification in other Necturus Characterization of microsatellite loci for the Gulf Coast waterdog (Necturus beyeri) using paired-end Illumina shotgun sequencing and cross-amplification in other Necturus

Amphibians are one of the most threatened groups of vertebrates (Stuart et al. 2004; Wake and Vredenburg 2008), and the application of molecular techniques to amphibian ecology and genetics has dramatically improved our ability to conserve species and populations (see Shaffer et al. [2015] for review). Microsatellites, tandem repeats of two to six nucleotides in the nuclear genome, are...
Authors
Jennifer Y. Lamb, Brian R. Kreiser, Hardin Waddle, Carl P. Qualls

Are nest boxes ecological traps for red-footed falcons Falco vespertinius at Naurzum Are nest boxes ecological traps for red-footed falcons Falco vespertinius at Naurzum

Nest box programs are frequently implemented for conservation of cavity-nesting birds, but their effectiveness is rarely evaluated in comparison to birds not using nest boxes. In the European Palearctic, Red-Footed Falcon (Falco vespertinus) populations are both of high conservation concern and are strongly associated with nest box programs in heavily managed landscapes. We used a 21...
Authors
Todd E. Katzner, Alexander E. Bragin, Evgeny A. Bragin

Population expansion of Humpback chub in western Grand Canyon and hypothesized mechanisms Population expansion of Humpback chub in western Grand Canyon and hypothesized mechanisms

Humpback chub, Gila cypha, is an endangered warm water fish endemic to the Colorado River basin of southwestern North America. In Grand Canyon National Park, cold hypolimnetic water-release temperatures from Glen Canyon Dam have largely precluded successful spawning and recruitment of humpback chub in the mainstem Colorado River. Therefore, the species has utilized the warmer, more...
Authors
David R. VanHaverbeke, Dennis M. Stone, Michael Dodrill, Kirk L. Young, Michael J. Pillow

Serologic surveillance of wild and pen-reared ring-necked pheasants (Phasianus colchicus) as a method of understanding disease reservoirs Serologic surveillance of wild and pen-reared ring-necked pheasants (Phasianus colchicus) as a method of understanding disease reservoirs

We investigated exposure to infectious diseases in wild (n=33) and pen-reared (n=12) Ring-necked Pheasants (Phasianus colchicus) in the Central Valley of California during 2014 and 2015. Serologic tests were positive for antibodies against hemorrhagic enteritis (HE), infectious bursal disease (IBD), and Newcastle disease (ND) viruses in both wild and pen-reared pheasants.
Authors
Ian Dwight, Peter S. Coates, Simone T. Stoute, C. Gabriel Senties-Cue, Radhika V. Gharpure, Maurice E. Pitesky

Population genetic structure and gene flow of Adélie penguins (Pygoscelis adeliae) breeding throughout the western Antarctic Peninsula Population genetic structure and gene flow of Adélie penguins (Pygoscelis adeliae) breeding throughout the western Antarctic Peninsula

Adélie penguins (Pygoscelis adeliae) are responding to ocean–climate variability throughout the marine ecosystem of the western Antarctic Peninsula (WAP) where some breeding colonies have declined by 80%. Nuclear and mitochondrial DNA (mtDNA) markers were used to understand historical population genetic structure and gene flow given relatively recent and continuing reductions in sea ice...
Authors
Kristen B. Gorman, Sandra L. Talbot, Sarah A. Sonsthagen, George K. Sage, Megan C. Gravley, Tony D. Williams, William R. Fraser

Reproductive success of Mariana swiftlets (Aerodramus bartschi) on the Hawaiian island of O'ahu Reproductive success of Mariana swiftlets (Aerodramus bartschi) on the Hawaiian island of O'ahu

Mariana Swiftlets (Aerodramus bartschi) are federally listed as endangered, with populations currently limited to just three islands in the Mariana Islands plus an introduced population on the Hawaiian island of O'ahu. Before efforts are made to reintroduce Mariana Swiftlets to other islands in the Mariana archipelago, additional information is needed concerning their breeding biology...
Authors
Nathan C. Johnson, Susan M. Haig, Stephen M. Mosher, Jeff P. Hollenbeck

The thermal regime and species composition of fish and invertebrates in Kelly Warm Spring, Grand Teton National Park, Wyoming The thermal regime and species composition of fish and invertebrates in Kelly Warm Spring, Grand Teton National Park, Wyoming

We evaluated the thermal regime and relative abundance of native and nonnative fish and invertebrates within Kelly Warm Spring and Savage Ditch, Grand Teton National Park, Wyoming. Water temperatures within the system remained relatively warm year-round with mean temperatures >20 °C near the spring source and >5 °C approximately 2 km downstream of the source. A total of 7 nonnative...
Authors
David Harper, Aida Farag
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