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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 43023

Potential paths for male-mediated gene flow to and from an isolated grizzly bear population Potential paths for male-mediated gene flow to and from an isolated grizzly bear population

For several decades, grizzly bear populations in the Greater Yellowstone Ecosystem (GYE) and the Northern Continental Divide Ecosystem (NCDE) have increased in numbers and range extent. The GYE population remains isolated and although effective population size has increased since the early 1980s, genetic connectivity between these populations remains a long-term management goal. With...
Authors
Christopher P. Peck, Frank T. van Manen, Cecily M. Costello, Mark A. Haroldson, Lisa Landenburger, Lori L. Roberts, Daniel D. Bjornlie, Richard D. Mace

Monitoring eradication of European mouflon sheep from the Kahuku Unit of Hawai‘i Volcanoes National Park Monitoring eradication of European mouflon sheep from the Kahuku Unit of Hawai‘i Volcanoes National Park

European mouflon (Ovis gmelini musimon), the world's smallest wild sheep, have proliferated and degraded fragile native ecosystems in the Hawaiian Islands through browsing, bark stripping, and trampling, including native forests within Hawai‘i Volcanoes National Park (HAVO). HAVO resource managers initiated ungulate control efforts in the 469 km2 Kahuku Unit after it was acquired in 2003...
Authors
Seth Judge, Steven C. Hess, Jonathan K. Faford, Dexter Pacheco, Christina Leopold

Estimating vegetation biomass and cover across large plots in shrub and grass dominated drylands using terrestrial lidar and machine learning Estimating vegetation biomass and cover across large plots in shrub and grass dominated drylands using terrestrial lidar and machine learning

Terrestrial laser scanning (TLS) has been shown to enable an efficient, precise, and non-destructive inventory of vegetation structure at ranges up to hundreds of meters. We developed a method that leverages TLS collections with machine learning techniques to model and map canopy cover and biomass of several classes of short-stature vegetation across large plots. We collected high...
Authors
Kyle E. Anderson, Nancy F. Glenn, Lucas P. Spaete, Douglas J. Shinneman, David S. Pilliod, Robert Arkle, Susan K. McIlroy, DeWayne R. Derryberry

Characterizing sources of uncertainty from global climate models and downscaling techniques Characterizing sources of uncertainty from global climate models and downscaling techniques

In recent years climate model experiments have been increasingly oriented towards providing information that can support local and regional adaptation to the expected impacts of anthropogenic climate change. This shift has magnified the importance of downscaling as a means to translate coarse-scale global climate model (GCM) output to a finer scale that more closely matches the scale of...
Authors
Adrienne Wootten, Adam Terando, Brian J. Reich, Ryan P. Boyles, Fred Semazzi

Statistical design and analysis for plant cover studies with multiple sources of observation errors Statistical design and analysis for plant cover studies with multiple sources of observation errors

Effective wildlife habitat management and conservation requires understanding the factors influencing distribution and abundance of plant species. Field studies, however, have documented observation errors in visually estimated plant cover including measurements which differ from the true value (measurement error) and not observing a species that is present within a plot (detection error...
Authors
Wilson J. Wright, Kathryn M. Irvine, Jeffrey M . Warren, Jenny K. Barnett

Divergent migration within lake sturgeon (Acipenser fulvescens) populations: Multiple distinct patterns exist across an unrestricted migration corridor Divergent migration within lake sturgeon (Acipenser fulvescens) populations: Multiple distinct patterns exist across an unrestricted migration corridor

Population structure, distribution, abundance, and dispersal arguably underpin the entire field of animal ecology, with consequences for regional species persistence, and provision of ecosystem services. Divergent migration behaviours among individuals or among populations is an important aspect of the ecology of highly-mobile animals, allowing populations to exploit spatially- or...
Authors
Steven T. Kessel, Darryl W. Hondorp, Christopher M. Holbrook, James C. Boase, Justin A. Chiotti, Michael V. Thomas, Todd C. Wills, Edward F. Roseman, Richard Drouin, Charles C. Krueger

Ecosystem vs. community recovery 25 years after grass invasions and fire in a subtropical woodland Ecosystem vs. community recovery 25 years after grass invasions and fire in a subtropical woodland

Despite a large body of research documenting invasive plant impacts, few studies have followed individual invaded sites over decades to observe how they change, and none have contrasted how compositional impacts from invasion compare to ecosystem-process impacts over a multi-decadal time-scale. Using direct measurements of plant density and composition and of ecosystems processes, we...
Authors
Carla M. D’Antonio, Stephanie G. Yelenik, Michelle C. Mack

Declines revisited: Long-term recovery and spatial population dynamics oftailed frog larvae after wildfire Declines revisited: Long-term recovery and spatial population dynamics oftailed frog larvae after wildfire

Drought has fueled an increased frequency and severity of large wildfires in many ecosystems. Despite an increase in research on wildfire effects on vertebrates, the vast majority of it has focused on short-term ( 5 years) effects and there is still little information on the time scale of population recovery for species that decline in abundance after fire. In 2003, a large wildfire in...
Authors
Blake R. Hossack, R. Ken Honeycutt

Widespread legacy brine contamination from oil production reduces survival of chorus frog larvae Widespread legacy brine contamination from oil production reduces survival of chorus frog larvae

Advances in drilling techniques have facilitated a rapid increase in hydrocarbon extraction from energy shales, including the Williston Basin in central North America. This area overlaps with the Prairie Pothole Region, a region densely populated with wetlands that provide numerous ecosystem services. Historical (legacy) disposal practices often released saline co-produced waters (brines...
Authors
Blake R. Hossack, Holly J. Puglis, William A. Battaglin, Chauncey W. Anderson, R. Ken Honeycutt, Kelly L. Smalling

Quarterly wildlife mortality report October 2017 Quarterly wildlife mortality report October 2017

No abstract available
Authors
Bryan J. Richards, Barbara L. Bodenstein, Anne Ballmann, C. LeAnn White, Leslie Frattaroli

A effective DNA vaccine against diverse genotype J infectious hematopoietic necrosis virus strains prevalent in China A effective DNA vaccine against diverse genotype J infectious hematopoietic necrosis virus strains prevalent in China

Infectious hematopoietic necrosis virus (IHNV) is the most important pathogen threatening the aquaculture of salmonid fish in China. In this study, a DNA vaccine, designated pIHNch-G, was constructed with the glycoprotein (G) gene of a Chinese IHNV isolate SD-12 (also called Sn1203) of genotype J. The minimal dose of vaccine required, the expression of the Mx-1 gene in the muscle...
Authors
Liming Xu, Jingzhuang Zhao, Miao Liu, Gael Kurath, Guangming Ren, Scott E. LaPatra, Jiasheng Yin, Hongbai Liu, Jian Feng, Tongyan Lu

Endozoicomonas dominates the gill and intestinal content microbiomes of Mytilus edulis from Barnegat Bay, New Jersey Endozoicomonas dominates the gill and intestinal content microbiomes of Mytilus edulis from Barnegat Bay, New Jersey

Blue mussels, Mytilus edulis, Linnaeus 1758 from southern Barnegat Bay, New Jersey were examined to determine the make-up of the normal blue mussel microbiome. Sequencing of 16S ribosomal DNA amplicons from gill and intestinal content microbiomes using the Illumina® MiSeq platform yielded 1,276,161 paired end sequence reads from the gill libraries and 1,092,333 paired end sequence reads...
Authors
William B. Schill, Deborah D. Iwanowicz, Cynthia R. Adams
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