Publications
This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.
Filter Total Items: 42702
Cambrian origin of the CYP27C1-mediated vitamin A1-to-A2 switch, a key mechanism of vertebrate sensory plasticity Cambrian origin of the CYP27C1-mediated vitamin A1-to-A2 switch, a key mechanism of vertebrate sensory plasticity
The spectral composition of ambient light varies across both space and time. Many species of jawed vertebrates adapt to this variation by tuning the sensitivity of their photoreceptors via the expression of CYP27C1, an enzyme that converts vitamin A1 into vitamin A2, thereby shifting the ratio of vitamin A1-based rhodopsin to red-shifted vitamin A2-based porphyropsin in the eye. Here, we...
Authors
Ala Morshedian, Matthew B. Toomery, Gabriel E. Pollock, Rikard Frederiksen, Jennifer Enright, Stephen D. McCormick, M. Carter Cornwall, Gordon L. Fain, Joseph C. Corbo
Acquisition of Borrelia burgdorferi infection by larval Ixodes scapularis (Acari: Ixodidae) associated with engorgement measures Acquisition of Borrelia burgdorferi infection by larval Ixodes scapularis (Acari: Ixodidae) associated with engorgement measures
Measuring rates of acquisition of the Lyme disease pathogen, Borrelia burgdorferi sensu lato Johnson, Schmid, Hyde, Steigerwalt & Brenner, by the larval stage of Ixodes scapularis Say is a useful tool for xenodiagnoses of B. burgdorferi in vertebrate hosts. In the nymphal and adult stages of I. scapularis, the duration of attachment to hosts has been shown to predict both body...
Authors
Janelle Couret, M.C. Dyer, T.N. Mather, S. Han, J.I. Tsao, R.A. LeBrun, Howard S. Ginsberg
Adding a nitrogen footprint to Colorado State University’s sustainability plan Adding a nitrogen footprint to Colorado State University’s sustainability plan
As a large land grant university with more than 32,000 students, Colorado State University has both on-campus non-agricultural and agricultural sources of nitrogen (N) released to the environment. We used the Nitrogen Footprint Tool to estimate the amount of N released from different sectors of the university for the CSU 2014 academic year. The largest on campus sources were food...
Authors
Jacob Kimiecik, Jill Baron, Timothy Weinmann, Emily Taylor
Life history constraints explain negative relationship between fish productivity and dissolved organic carbon in lakes Life history constraints explain negative relationship between fish productivity and dissolved organic carbon in lakes
Resource availability constrains the life history strategies available to organisms and may thereby limit population growth rates and productivity. We used this conceptual framework to explore the mechanisms driving recently reported negative relationships between fish productivity and dissolved organic carbon (DOC) concentrations in lakes. We studied populations of bluegill (Lepomis...
Authors
Nicola Craig, Stuart E. Jones, Brian Weidel, Christopher T. Solomon
USGS Integration of New Science and Technology, Appendix A USGS Integration of New Science and Technology, Appendix A
This product summarizes the USGS plans for integration of new science and technology into Asian Carp control efforts for 2017. This includes the 1) implementation and evaluation of new tactics and behavioral information for monitoring, surveillance, control and containment; 2) understanding behavior and reproduction of Asian carp in established and emerging populations to inform...
Authors
Marybeth K. Brey, Brent C. Knights, Aaron R. Cupp, Jon Amberg, Duane Chapman, Robin D. Calfee, James J. Duncker
Understanding and finding solutions to the problem of sedimentation in the National Wildlife Refuge System Understanding and finding solutions to the problem of sedimentation in the National Wildlife Refuge System
The National Wildlife Refuge System (Refuge System) is a collection of public lands maintained by the U.S. Fish and Wildlife Service for migratory birds and other wildlife. Wetlands on individual National Wildlife Refuges (Refuges) may be at risk of increased sedimentation because of land use and water management practices. Increased sedimentation can reduce wetland habitat quality by...
Authors
Max Post van der Burg, Karen Jenni, Timothy L. Nieman, Josh D. Eash, Gregory A. Knutsen
Intra-reach headwater fish assemblage structure Intra-reach headwater fish assemblage structure
Large-scale conservation efforts can take advantage of modern large databases and regional modeling and assessment methods. However, these broad-scale efforts often assume uniform average habitat conditions and/or species assemblages within stream reaches.
Authors
James E. McKenna
Landform features and seasonal precipitation predict shallow groundwater influence on temperature in headwater streams Landform features and seasonal precipitation predict shallow groundwater influence on temperature in headwater streams
Headwater stream responses to climate change will depend in part on groundwater‐surface water exchanges. We used linear modeling techniques to partition likely effects of shallow groundwater seepage and air temperature on stream temperatures for 79 sites in nine focal watersheds using hourly air and water temperature measurements collected during summer months from 2012 to 2015 in...
Authors
Zachary C. Johnson, Craig D. Snyder, Nathaniel P. Hitt
Does bioelectrical impedance analysis accurately estimate the condition of threatened and endangered desert fish species? Does bioelectrical impedance analysis accurately estimate the condition of threatened and endangered desert fish species?
Bioelectrical impedance analysis (BIA) is a nonlethal tool with which to estimate the physiological condition of animals that has potential value in research on endangered species. However, the effectiveness of BIA varies by species, the methodology continues to be refined, and incidental mortality rates are unknown. Under laboratory conditions we tested the value of using BIA in...
Authors
Kimberly L. Dibble, Micheal D. Yard, David L. Ward, Charles B. Yackulic
Puffins reveal contrasting relationships between forage fish and ocean climate in the North Pacific Puffins reveal contrasting relationships between forage fish and ocean climate in the North Pacific
Long-term studies of predator food habits (i.e., ‘predator-based sampling’) are useful for identifying patterns of spatial and temporal variability of forage nekton in marine ecosystems. We investigated temporal changes in forage fish availability and relationships to ocean climate by analyzing diet composition of three puffin species (horned puffin Fratercula corniculata, tufted puffin...
Authors
William J. Sydeman, John F. Piatt, Sarah Ann Thompson, Marisol Garcia-Reyes, Scott A. Hatch, Mayumi L. Arimitsu, Leslie Slater, Jeffrey C. Williams, Nora A. Rojek, Stephani G. Zador, Heather M. Renner
Integration of vegetation community spatial data into a prescribed fire planning process at Shenandoah National Park, Virginia (USA) Integration of vegetation community spatial data into a prescribed fire planning process at Shenandoah National Park, Virginia (USA)
Many eastern forest communities depend on fire for regeneration or are enhanced by fire as a restoration practice. However, the use of prescribed fire in the mesic forested environments and the densely populated regions of the eastern United States has been limited. The objective of our research was to develop a science-based approach to prioritizing the use of prescribed fire in...
Authors
John A. Young, Carolyn G. Mahan, Melissa Forder
Monitoring water content dynamics of biological soil crusts Monitoring water content dynamics of biological soil crusts
Biological soil crusts (hereafter, “biocrusts”) dominate soil surfaces in nearly all dryland environments. To better understand the influence of water content on carbon (C) exchange, we assessed the ability of dual-probe heat-pulse (DPHP) sensors, installed vertically and angled, to measure changes in near-surface water content. Four DPHP sensors were installed in each of two research...
Authors
Michael H. Young, Lynn F. Fenstermaker, Jayne Belnap