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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42702

Cross-scale analysis reveals interacting predictors of annual and perennial cover in Northern Great Basin rangelands Cross-scale analysis reveals interacting predictors of annual and perennial cover in Northern Great Basin rangelands

Exotic annual grass invasion is a widespread threat to the integrity of sagebrush ecosystems in Western North America. Although many predictors of annual grass prevalence and native perennial vegetation have been identified, there remains substantial uncertainty about how regional-scale and local-scale predictors interact to determine vegetation heterogeneity, and how associations...
Authors
Madelon Florence Case, Kirk W. Davies, Chad S. Boyd, Lina Aoyama, Joanna Merson, Calvin Penkauskas, Lauren M. Hallett

Modeling the potential spread of the non-native regal demoiselle, Neopomacentrus cyanomos, in the western Atlantic Modeling the potential spread of the non-native regal demoiselle, Neopomacentrus cyanomos, in the western Atlantic

Predicting the potential distribution of a non-native species can assist management efforts to mitigate impacts on recipient ecosystems. However, such predictions are lacking for marine species, such as the non-native regal demoiselle, Neopomacentrus cyanomos, that is currently expanding its distribution in the western Atlantic. We used correlative species distribution models with three...
Authors
Melanie M Esch, Catherine S. Jarnevich, Nuno Simoes, Timothy R McClanahan, Alastair R Harborne

Status and trends of pelagic and benthic prey fish populations in Lake Michigan, 2023 Status and trends of pelagic and benthic prey fish populations in Lake Michigan, 2023

Fall bottom trawl (fall BT) and lakewide acoustic (AC) surveys are conducted annually to generate indices of pelagic and benthic prey fish densities in Lake Michigan. The fall BT survey has been conducted each fall since 1973 using 12-m trawls at depths ranging from 9 to 110 m at fixed locations distributed across seven transects; this survey estimates densities of seven prey fish...
Authors
David Warner, Ralph W. Tingley, Charles P. Madenjian, Cory Brant, Steve A. Farha, Patricia Dieter, Benjamin A. Turschak, Dale Hanson, Kristy Phillips, Caleb Geister

The roles of diet and habitat use in pesticide bioaccumulation by juvenile Chinook Salmon: Insights from stable isotopes and fatty acid biomarkers The roles of diet and habitat use in pesticide bioaccumulation by juvenile Chinook Salmon: Insights from stable isotopes and fatty acid biomarkers

Stable isotopes (SI) and fatty acid (FA) biomarkers can provide insights regarding trophic pathways and habitats associated with contaminant bioaccumulation. We assessed relationships between SI and FA biomarkers and published data on concentrations of two pesticides [dichlorodiphenyltrichloroethane and degradation products (DDX) and bifenthrin] in juvenile Chinook Salmon (Oncorhynchus...
Authors
Sara E. Anzalone, Neil W. Fuller, Kara E. Huff Hartz, Gregory W. Whitledge, Jason Tyler Magnuson, Daniel Schlenk, Shawn Acuña, Matt R. Whiles, Michael J. Lydy

Genetic Connectivity in the Arizona toad (Anaxyrus microscaphus): implications for conservation of a stream dwelling amphibian in the arid Southwestern U.S. Genetic Connectivity in the Arizona toad (Anaxyrus microscaphus): implications for conservation of a stream dwelling amphibian in the arid Southwestern U.S.

The Arizona Toad (Anaxyrus microscaphus) is restricted to riverine corridors and adjacent uplands in the arid southwestern United States. As with numerous amphibians worldwide, populations are declining and face various known or suspected threats, from disease to habitat modification resulting from climate change. The Arizona Toad has been petitioned to be listed under the U.S...
Authors
Sara J. Oyler-McCance, Mason J. Ryan, Brian K. Sullivan, Jennifer A. Fike, Robert S. Cornman, J. T. Giermakowski, Shawna J Zimmerman, R. L. Harrow, S.J. Hedwell, Blake R. Hossack, I. M. Latella, R. E. Lovish, S. Siefken, Brent H. Sigafus, Erin L. Muths

How diverse is the toolbox? A review of management actions to conserve or restore coregonines How diverse is the toolbox? A review of management actions to conserve or restore coregonines

Over the past centuries, coregonines have been exposed to a range of stressors that have led to extinctions, extirpations, and speciation reversals. Given that some populations remain at risk and fishery managers have begun restoring coregonines where they have been extirpated, we reviewed the primary and gray literature to describe the diversity of coregonine restoration or conservation...
Authors
David Bunnell, Orlane Anneville, Jan Baer, Colin Bean, Kimmo Kahlilainen, Alfred Sandstrom, Oliver Selz, Pascal Vonlanthen, Josef Wanzenbock, Brian Weidel

Evaluation of data collected by Guam Division of Aquatic and Wildlife Resources during population establishment and monitoring of ko'ko' (Hypotaenidia owstoni) on Rota, Commonwealth of the Northern Mariana Islands, and wildlife monitoring datasets on Coco Evaluation of data collected by Guam Division of Aquatic and Wildlife Resources during population establishment and monitoring of ko'ko' (Hypotaenidia owstoni) on Rota, Commonwealth of the Northern Mariana Islands, and wildlife monitoring datasets on Coco

Efforts to recover the critically endangered ko’ko’ (Guam rail, Hypotaenidia owstoni) through establishing an experimental population on the island of Rota in the Commonwealth of the Northern Mariana Islands have been ongoing for three decades. The U.S. Geological Survey collaborated with the Guam Division of Aquatic and Wildlife Resources and the Government of Guam to evaluate whether...
Authors
Richard J. Camp, Sarah A B Nash, Kristina L. Paxton

Metagenomic sequencing sheds light on microbes putatively associated with pneumonia-related fatalities of white-tailed deer (Odocoileus virginianus) Metagenomic sequencing sheds light on microbes putatively associated with pneumonia-related fatalities of white-tailed deer (Odocoileus virginianus)

With emerging infectious disease outbreaks in human, domestic and wild animal populations on the rise, improvements in pathogen characterization and surveillance are paramount for the protection of human and animal health, as well as the conservation of ecologically and economically important wildlife. Genomics offers a range of suitable tools to meet these goals, with metagenomic...
Authors
Melanie B. Prentice, Marie L.J. Gilbertson, Daniel J. Storm, Allison H. Roy, Daniel P. Walsh, Marie E. Pinkerton, Pauline L. Kamath

The Metzger marsh restoration: A vegetation-centric look after 27 years The Metzger marsh restoration: A vegetation-centric look after 27 years

We investigated wetland vegetation before, during, and after dike construction at the Metzger Marsh project in western Lake Erie, which was designed to restore a 300-ha wetland that had been degraded following the loss of a protective barrier beach. A dike was constructed in 1995 to replace the function of the eroded barrier beach, but it contained a water-control structure to allow...
Authors
Douglas A. Wilcox, Kurt P. Kowalski, Alexandra A Bozimowski

Controls on in-stream nitrogen loss in western Lake Erie tributaries Controls on in-stream nitrogen loss in western Lake Erie tributaries

Management efforts to reduce cyanobacterial harmful algal blooms (cHABs) in the Great Lakes have focused on decreasing tributary inputs of phosphorus (P). Recent research has indicated that reduction of both P and nitrogen (N) can lessen cHABs severity. Microbially mediated N cycling in streambed sediment may reduce N riverine loads, yet little is known about in-stream N processing rates...
Authors
Rebecca M. Kreiling, Lynn A. Bartsch, Patrik Mathis Perner, Kenna Jean Breckner, Tanja N. Williamson, James M. Hood, Nathan F. Manning, Laura T. Johnson

Establishment of terrestrial mammals on former reservoir beds following large dam removal on the Elwha River, Washington, USA Establishment of terrestrial mammals on former reservoir beds following large dam removal on the Elwha River, Washington, USA

Terrestrial wildlife species are important yet often overlooked taxa in the recovery of ecosystems following dam removal. Their presence can shape ecosystem recovery, signal restoration of ecosystem function, and influence food web dynamics and nutrient transfer. We used camera traps to examine seasonal use of two former reservoir beds and an upstream reference reach by the mammalian...
Authors
Rebecca McCaffery, Sara Cendejas-Zarelli, Katy R Goodwin, Patricia J. Happe, Kurt Jenkins, Kimberly A. Sager-Fradkin

At-a-Glance—Summary of the 2023 U.S. Geological Survey Cooperative Research Units Program Year-in-Review At-a-Glance—Summary of the 2023 U.S. Geological Survey Cooperative Research Units Program Year-in-Review

Introduction Established in 1935, the U.S. Geological Survey (USGS) Cooperative Fish and Wildlife Research Units (CRU) program is a unique partnership among the USGS, State Fish and Wildlife agencies, host universities, the Wildlife Management Institute (WMI), and the U.S. Fish and Wildlife Service (FWS). As of 2023, there are 43 CRUs in 41 states that fall under three supervisory...
Authors
Caroline E. Murphy, Elise R. Irwin, Dawn E. Childs, Donald E. Dennerline, Jonathan R. Mawdsley
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