Publications
This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.
Filter Total Items: 42768
Ecological inferences on invasive carp survival using hydrodynamics and egg drift models Ecological inferences on invasive carp survival using hydrodynamics and egg drift models
Bighead carp (Hypophthalmichthys nobilis), silver carp (H. molitrix), black carp (Mylopharyngodon piceus), and grass carp (Ctenopharyngodon idella), are invasive species in North America. However, they hold significant economic importance as food sources in China. The drifting stage of carp eggs has received great attention because egg survival rate is strongly affected by river...
Authors
Ruichen Xu, Duane Chapman, Caroline M. Elliott, Bruce Call, Robert B. Jacobson, Binbin Yang
A hierarchical model for eDNA fate and transport dynamics accommodating low concentration samples A hierarchical model for eDNA fate and transport dynamics accommodating low concentration samples
Environmental DNA (eDNA) sampling is an increasingly important tool for answering ecological questions and informing aquatic species management; however, several factors currently limit the reliability of ecological inference from eDNA sampling. Two particular challenges are 1) determining species source location(s) and 2) accurately and precisely measuring low concentration eDNA samples...
Authors
Ben Augustine, Patrick Ross Hutchins, Devin Nicole Jones-Slobodian, Jacob R. Williams, Eric Leinonen, Adam Sepulveda
Environmental DNA dynamics of three species of unionid freshwater mussels Environmental DNA dynamics of three species of unionid freshwater mussels
North American freshwater mussels are of special conservation concern due to their high endemism and the multiple anthropogenic stressors affecting them. Of the over 300 species in North America, nearly one third of these species are federally listed as threatened or endangered. Environmental DNA (eDNA) analysis has been successful in detecting freshwater mussels and could aid in...
Authors
Dannise Ruiz-Ramos, Nathan Thompson, Catherine A. Richter, Megan C. Voshage, Theresa M. Schreier, Christopher M. Merkes, Katy E. Klymus
Carotenoid skin ornaments as flexible indicators of male foraging behavior in a marine predator: Variation among Mexican colonies of brown booby (Sula leucogaster) Carotenoid skin ornaments as flexible indicators of male foraging behavior in a marine predator: Variation among Mexican colonies of brown booby (Sula leucogaster)
Carotenoid-dependent ornaments can reflect animals’ diet and foraging behaviors. However, this association should be spatially flexible and variable among populations to account for geographic variation in optimal foraging behaviors. We tested this hypothesis using populations of a marine predator (the brown booby, Sula leucogaster) that forage across a gradient in ocean depth in and...
Authors
Nathan P. Michael, Roxana Torres, Andreanna J. Welch, Jonathan J. Felis, Mario Erandi Bonillas-Monge, Josh Adams, Samantha Hodgson, Laura Lopez-Marques, Alejadro Martínez-Flores, Gala Enidh Castro-Mejias, Anne E. Wiley
Eggshell membrane thickness and its contribution to total eggshell thickness for 13 waterbird species Eggshell membrane thickness and its contribution to total eggshell thickness for 13 waterbird species
Eggshell thickness can be an indicator of environmental pollution in wild birds and shell quality in wild and domestic birds, but it is difficult to measure calcite eggshell thickness due to the presence of the adherent outer eggshell membrane. Eggshells of 13 waterbird species were divided in half longitudinally and the outer membrane was removed from one of the halves. Subsequently, we...
Authors
Gary M. Santolo, Sarah H. Peterson, Breanne Cooney, C. Alex Hartman, Mark P. Herzog, Joshua T. Ackerman
Wetland creation and reforestation of legacy surface mines in the Central Appalachian Region (USA): A potential climate-adaptation approach for pond-breeding amphibians? Wetland creation and reforestation of legacy surface mines in the Central Appalachian Region (USA): A potential climate-adaptation approach for pond-breeding amphibians?
Habitat restoration and creation within human-altered landscapes can buffer the impacts of climate change on wildlife. The Forestry Reclamation Approach (FRA) is a coal surface mine reclamation practice that enhances reforestation through soil decompaction and the planting of native trees. Recently, wetland creation has been coupled with FRA to increase habitat available for wildlife...
Authors
Lauren Sherman, Christopher D. Barton, Jacquelyn C. Guzy, Rebecca N. Davenport, John J. Cox, Jeffery L. Larkin, Todd Fearer, Jillian C. Newman, Steven J. Price
Phylogenomics, male internal genitalia, a new species, and other notes on New World Stenopelmatus Jerusalem crickets (Orthoptera: Stenopelmatoidea: Stenopelmatini) Phylogenomics, male internal genitalia, a new species, and other notes on New World Stenopelmatus Jerusalem crickets (Orthoptera: Stenopelmatoidea: Stenopelmatini)
Based on past and expanded DNA sampling, the orthopteran families Stenopelmatidae and Anostostomatidae, as currently structured, are shown to be non-monophyletic. The splay-footed cricket genus Comicus is confirmed to be genetically distinct from all Stenopelmatidae. We add two specimens to our previously published phylogenetic tree for New World Stenopelmatus Jerusalem cricket species...
Authors
David B. Weissman, Hojun Song, Amy G. Vandergast
Heterologous exchanges of glycoprotein and non-virion protein in novirhabdoviruses: Assessment of virlence in yellow perch (Perca flavescens) and rainbow trout (Oncorhynchus mykiss) Heterologous exchanges of glycoprotein and non-virion protein in novirhabdoviruses: Assessment of virlence in yellow perch (Perca flavescens) and rainbow trout (Oncorhynchus mykiss)
Infectious hematopoietic necrosis virus (IHNV) and viral hemorrhagic septicemia virus (VHSV) are rhabdoviruses in two different species belonging to the Novirhabdovirus genus. IHNV has a narrow host range restricted to trout and salmon species, and viruses in the M genogroup of IHNV have high virulence in rainbow trout (Oncorhynchus mykiss). In contrast, the VHSV genotype IVb that...
Authors
Vikram N. Vakharia, Arun Ammayappan, Shamila Yusuff, Tarin M. Tesfaye, Gael Kurath
First documentation of grass carp spawning in Lake Erie’s Central Basin First documentation of grass carp spawning in Lake Erie’s Central Basin
Grass carp (Ctenopharyngodon idella) are non-indigenous to North America having been translocated to the United States in the 1960s as a potential non-chemical solution for nuisance aquatic vegetation. Reproductively viable grass carp now exist in many watersheds in the United States. In the Great Lakes basin, grass carp were first discovered in the 1980s with direct confirmation of...
Authors
Corbin David Hilling, Adam J. Landry, James Roberts, Nathan Thompson, Cathy A. Richter, Ryan E. Brown, Christine M. Mayer, Song S. Qian
West Nile virus (avian) case definition for wildlife West Nile virus (avian) case definition for wildlife
Diagnostic laboratories receive carcasses and samples for diagnostic evaluation and pathogen/toxin detection. Case definitions bring clarity and consistency to the evaluation process. Their use within and between organizations allows more uniform reporting of diseases and etiologic agents. The intent of a case definition is to provide scientifically based criteria for determining (a) if...
Authors
Stephane Lair, Valerie I. Shearn-Bochsler, Marnie Zimmer
Albinism in American Bullfrog, Lithobates catesbeianus Shaw, 1802 tadpoles from the Gila River, New Mexico, USA Albinism in American Bullfrog, Lithobates catesbeianus Shaw, 1802 tadpoles from the Gila River, New Mexico, USA
No abstract available.
Authors
Andrew M. Ray, J Andy Hubbard, Owen T Brown, Elizabeth R Schnaubelt, J. Tomasz Giermakowski, Erin R Zylstra, Blake R. Hossack
The influence of channel morphology and hydraulic complexity on larval pallid sturgeon (Scaphirhynchus albus) drift and dispersal dynamics in the Fort Peck Segment, Upper Missouri River: Insights from particle tracking simulations The influence of channel morphology and hydraulic complexity on larval pallid sturgeon (Scaphirhynchus albus) drift and dispersal dynamics in the Fort Peck Segment, Upper Missouri River: Insights from particle tracking simulations
Longitudinal dispersal of migratory fish species can be interrupted by factors that fragment rivers, such as dams and reservoirs with incompatible habitats, and indirect alterations to variables, such as water temperature or turbidity. The endangered pallid sturgeon (Scaphirhynchus albus) population in the Upper Missouri River Basin in North Dakota and Montana is an example of such...
Authors
Bruce Call, Richard R. McDonald, Susannah Erwin, R. B. Jacobson