Publications
This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.
Filter Total Items: 42707
A novel method for estimating pathogen presence, prevalence, load, and dynamics at multiple scales A novel method for estimating pathogen presence, prevalence, load, and dynamics at multiple scales
The use of quantitative real-time PCR (qPCR) to monitor pathogens is common; however, quantitative frameworks that consider the observation process, dynamics in pathogen presence, and pathogen load are lacking. This can be problematic in the early stages of disease progression, where low level detections may be treated as ‘inconclusive’ and excluded from analyses. Alternatively, a...
Authors
John F. Gridder, Bradley James Udell, Brian Reichert, Jeffery T. Foster, William Louis Kendall, Tina L. Cheng, Winifred F. Frick
Effects of invasive American bullfrogs and their removal on Northwestern pond turtles Effects of invasive American bullfrogs and their removal on Northwestern pond turtles
The American bullfrog (Rana catesbeiana) is an invasive species globally significant for its role as a generalist predator in freshwater systems. Native turtles are among the species eaten by bullfrogs, and turtle populations are slow to recover from this impact. We examined the effects of bullfrogs and their removal on Northwestern pond turtles (Actinemys marmorata) at four sites in...
Authors
Sidney M. Woodruff, Robert L. Grasso, Brian Halstead, Brian D. Todd
Biodiversity surveys of Wake Atoll—Featuring field guides for plants, arthropods, and herpetofauna Biodiversity surveys of Wake Atoll—Featuring field guides for plants, arthropods, and herpetofauna
Introduction The U.S. Air Force (USAF) issued funds to the U.S. Geological Survey (USGS) to update the biosecurity plan, create a current (2019) flora and fauna species identification index, and do container evaluations for the presence of potential invasives. The current (2019) biosecurity protocols used for prevention were evaluated, and new biodiversity surveys were completed for...
Authors
Stacie A. Hathaway, James D. Jacobi, Robert Peck, Adam R. Backlin, Cynthia J. Hitchcock, Robert N. Fisher
Mortality events in Yuma myotis (Myotis yumanensis) due to white-nose syndrome in Washington, USA Mortality events in Yuma myotis (Myotis yumanensis) due to white-nose syndrome in Washington, USA
The impacts of white-nose syndrome (WNS) on many bat species in eastern North America have been well documented because of the length of time that the causative agent, Pseudogymnoascus destructans (Pd), has been present and the ability to monitor bat hibernacula in that region. However, the disease outcomes for bat species in western North America are less known because of the more...
Authors
Jeffrey M. Lorch, A. Tobin, Alexandria Annelise Argue, Valerie I. Shearn-Bochsler, Brenda M. Berlowski-Zier, Kyle George, Katherine H. Haman, Anne Ballmann
Climate and dispersal ability limit future habitats for Gila monsters in the Mojave Desert Climate and dispersal ability limit future habitats for Gila monsters in the Mojave Desert
Describing future habitat for sensitive species can be helpful in planning conservation efforts to ensure species persistence under new climatic conditions. The Gila monster (Heloderma suspectum) is an iconic lizard of the southwestern United States. The northernmost range of Gila monsters is the Mojave Desert, an area experiencing rapid human population growth and urban sprawl. To...
Authors
Steven J. Hromada, Jason L. Jones, Jocelyn B. Stalker, Dustin A. Wood, Amy G. Vandergast, C. Richard Tracy, C.M. Gienger, Kenneth E. Nussear
Stable C and N isotope analyses redefine cisco as pelagic piscivores in Lake Michigan Stable C and N isotope analyses redefine cisco as pelagic piscivores in Lake Michigan
Lake Michigan’s cisco (Coregonus artedi) population is in the midst of an expansion (2011-present) recovering from near extirpation levels observed in the 1970 s. Strong evidence of piscivory derived from observed diet analyses suggests the population may occupy a unique trophic position relative to typical expectations for the species. To verify these observations, cisco and their prey...
Authors
Benjamin A. Turschak, Jason Smith, Ben S Breaker, Charles R. Bronte, David Bunnell, Jory Jonas, Matthew Kornis, Chad LaFaver, Kevin Pangle, Harvey A. Bootsma
Iguanas rafted more than 8,000 km from North America to Fiji Iguanas rafted more than 8,000 km from North America to Fiji
Founder-event speciation can occur when one or more organisms colonize a distant, unoccupied area via long-distance dispersal, leading to the evolution of a new species lineage. Species radiations established by long-distance, and especially transoceanic, dispersal can cause substantial shifts in regional biodiversity. Here, we investigate the occurrence and timing of the greatest known...
Authors
Simon G. Scarpetta, Robert D. Fisher, Benjamin R. Karin, Jone B. Niukula, Ammon Corl, Todd R. Jackman, Jimmy A. McGuire
Optimizing sampling across transect-based methods improves the power of agroecological monitoring data Optimizing sampling across transect-based methods improves the power of agroecological monitoring data
Transect-based monitoring has long been a valuable tool in ecosystem monitoring to measure multiple ecosystem attributes. The line-point intercept (LPI), vegetation height, and canopy gap intercept methods comprise a set of core methods, which provide indicators of ecosystem condition. However, users often struggle to design a sampling strategy that optimizes the ability to detect...
Authors
Sarah E. McCord, Nicholas P. Webb, Justin W. Van Zee, Ericha M. Courtright, Benjamin J Billings, Michael C. Duniway, Brandon L. Edwards, Emily Kachergis, Daniel N Moriasi, Brian Morra, Aleta Nafus, Beth A. Newingham, Drew A. Scott, David Toledo
Foundational science in flight—USGS bird programs support conservation, culture, and a thriving U.S. economy Foundational science in flight—USGS bird programs support conservation, culture, and a thriving U.S. economy
Birds are vital to our economy, ecosystems, and cultural heritage. Investing in bird conservation benefits communities, businesses, and working lands while reinforcing our nation’s legacy of stewardship and biodiversity. By valuing birds, we ensure a richer, healthier, and more vibrant future for all Americans. The USGS leads two national bird monitoring programs Thriving bird...
Authors
David Ziolkowski, Antonio Celis-Murillo, Jenn Malpass, Keith L. Pardieck, Julien Martin, Lauren Emily Walker
Meta-analysis of a megafish: Assessing patterns and predictors of Alligator Gar movement across multiple populations Meta-analysis of a megafish: Assessing patterns and predictors of Alligator Gar movement across multiple populations
Background Freshwater megafishes are among some of the most commercially and ecologically important aquatic organisms yet are disproportionately threatened with range and population reduction. Anthropogenic alterations of rivers influencing migrations are among the most significant causes for these declines. However, migratory fishes do not always respond similarly to movement barriers...
Authors
Hayden C. Roberts, Florian Kappen, Matthew Ross Acre, Daniel J. Daugherty, Nathan G. Smith, Joshuah S. Perkin
Informing adaptive management to reduce ungulate aggregations: A case study involving winter feeding of elk Informing adaptive management to reduce ungulate aggregations: A case study involving winter feeding of elk
In the United States, wildlife managers are entrusted with preserving culturally and economically important ungulate populations in the face of the ongoing spread of chronic wasting disease (CWD). The U.S. Fish and Wildlife Service established an adaptive management plan to reduce the reliance of elk (Cervus canadensis) on supplemental winter feeding on the National Elk Refuge. The end...
Authors
William Michael Janousek, Eric K. Cole, Sarah R. Dewey, Tabitha A. Graves
Population trends of native and non-native forest birds on the island of Molokai, Hawaii Population trends of native and non-native forest birds on the island of Molokai, Hawaii
Hawaiʻi’s avifauna has undergone profound changes over the past 1,000 years, with many endemic bird species driven to extinction and non-native introductions reshaping forest ecosystems. On the island of Molokaʻi, habitat degradation and the introduction of mosquito-borne disease, mainly avian malaria (Plasmodium relictum), have caused extinctions and severe declines in native forest...
Authors
Lauren K. Smith, Seth Judge, Ayesha Genz, Lainie Berry, Laura K Berthold, Hanna L. Mounce, Richard J. Camp