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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42876

Assessing the efficacy of protected and multiple-use lands for bird conservation in the U.S. Assessing the efficacy of protected and multiple-use lands for bird conservation in the U.S.

Setting land aside has long been a primary approach for protecting biodiversity; however, the efficacy of this approach has been questioned. We examined whether protecting lands positively influences bird species in the U.S., and thus overall biodiversity. We used the North American Breeding Bird Survey and Protected Areas Database of the U.S. to assess effects of protected and multiple...
Authors
L. Lynnette Dornak, Jocelyn L. Aycrigg, John R. Sauer, Courtney J. Conway

Comparative genomics and genomic epidemiology of mycobacterium avium subsp. paratuberculosis strains Comparative genomics and genomic epidemiology of mycobacterium avium subsp. paratuberculosis strains

Two phenotypically distinct strains of Mycobacterium avium subsp. paratuberculosis (MAP) were recognized in the 1930s but it was not until the introduction of restriction endonuclease analysis (REA) in the mid-1980s that these two strains, MAP-C and MAP-S, could be distinguished genetically. Since then, a plethora of molecular typing techniques has been applied to MAP isolates (reviewed...
Authors
Karen Stevenson, Christina Ahlstrom

The Everglades Depth Estimation Network (EDEN) surface-water interpolation model, version 3 The Everglades Depth Estimation Network (EDEN) surface-water interpolation model, version 3

The Everglades Depth Estimation Network (EDEN) is an integrated network of water-level gages, interpolation models that estimate daily water-level data at ungaged locations, and applications that generate derived hydrologic data across the freshwater part of the Greater Everglades landscape. Version 3 (V3) of the EDEN interpolation surface-water model is the most recent update, replacing...
Authors
Saira M. Haider, Eric Swain, James Beerens, Matthew D. Petkewich, Bryan McCloskey, Heather Henkel

Shifting food web structure during dam removal—Disturbance and recovery during a major restoration action Shifting food web structure during dam removal—Disturbance and recovery during a major restoration action

We measured food availability and diet composition of juvenile salmonids over multiple years and seasons before and during the world’s largest dam removal on the Elwha River, Washington State. We conducted these measurements over three sediment-impacted sections (the estuary and two sections of the river downstream of each dam) and compared these to data collected from mainstem...
Authors
Sarah A. Morley, Melissa M Foley, Jeffrey J. Duda, Mathew M Beirne, Rebecca L Paradis, Rachelle Carina Johnson, Michael L. McHenry, Mel Elofson, Earnest M Sampson, Randall E McCoy, Justin Stapleton, George R. Pess

The distribution of woody species in relation to climate and fire in Yosemite National Park, California, USA The distribution of woody species in relation to climate and fire in Yosemite National Park, California, USA

Background The effects of climate on plant species ranges are well appreciated, but the effects of other processes, such as fire, on plant species distribution are less well understood. We used a dataset of 561 plots 0.1 ha in size located throughout Yosemite National Park, in the Sierra Nevada of California, USA, to determine the joint effects of fire and climate on woody plant species...
Authors
Jan W. van Wagtendonk, Peggy E Moore, Julie L. Yee, James A. Lutz

Differences in rhizosphere microbial communities between native and non‐native Phragmites australis may depend on stand density Differences in rhizosphere microbial communities between native and non‐native Phragmites australis may depend on stand density

Microorganisms surrounding plant roots may benefit invasive species through enhanced mutualism or decreased antagonism, when compared to surrounding native species. We surveyed the rhizosphere soil microbiome of a prominent invasive plant, Phragmites australis, and its co‐occurring native subspecies for evidence of microbial drivers of invasiveness. If the rhizosphere microbial community...
Authors
Wesley A. Bickford, Donald R. Zak, Kurt P. Kowalski, Deborah E. Goldberg

Moderate susceptibility to subcutaneous plague (Yersinia pestis) challenge in vaccine-treated and untreated Sonoran deer mice (Peromyscus maniculatus sonoriensis) and northern grasshopper mice (Onychomys leucogaster) Moderate susceptibility to subcutaneous plague (Yersinia pestis) challenge in vaccine-treated and untreated Sonoran deer mice (Peromyscus maniculatus sonoriensis) and northern grasshopper mice (Onychomys leucogaster)

The variable response of wild mice to Yersinia pestis infection, the causative agent of plague, has generated much speculation concerning their role in the ecology of this potentially lethal disease. Researchers have questioned the means by which Y. pestis is maintained in nature and also sought methods for managing the disease. Here we assessed the efficacy of a new tool, the sylvatic...
Authors
Gebbiena Bron, Susan Smith, Judy L. Williamson, Daniel W. Tripp, Tonie E. Rocke

The collection and analysis of Bay of Fundy sediment under contract between the association of US delegates to the Gulf of Maine Council on the marine environment and eastern Charlotte waterways for contaminant monitoring and analysis The collection and analysis of Bay of Fundy sediment under contract between the association of US delegates to the Gulf of Maine Council on the marine environment and eastern Charlotte waterways for contaminant monitoring and analysis

This report presents data obtained through the EcoSystem Indicator Partnership (ESIP) which was established in 2006 to improve understanding and to inform researchers, managers, and citizens about the status and trends of ecosystem health in the Gulf of Maine (http://www.gulfofmaine.org/2/esip-homepage/). In its efforts to compile information on contaminant indicators in the Gulf of...
Authors
James S Latimer, David Page, Adria Elskus, Lawrence A LeBlanc, Gareth Harding, Peter G Wells

Toward improving pollinator habitat: Reconstructing prairies with high forb diversity Toward improving pollinator habitat: Reconstructing prairies with high forb diversity

Reconstructed prairies can provide habitat for pollinating insects, an important ecosystem service. To optimize reconstructions for pollinators, goals may include enhancing flowering plant cover and richness and increasing bloom availability early and late in the growing season. Resistance to invasive exotic species must also be a goal in any reconstruction, but it is unclear how...
Authors
Pauline Drobney, Diane L. Larson, Jennifer L Larson, Karen Viste-Sparkman

Effects of dewatering on behavior, distribution, and abundance of larval lampreys Effects of dewatering on behavior, distribution, and abundance of larval lampreys

Anthropogenic dewatering of aquatic habitats can cause stranding and mortality of burrowed larval lampreys; however, the effects of dewatering have not been quantified. We assessed: (a) changes in spatial distribution, abundance, and emergence of larvae dewatered at Leaburg Reservoir (OR); (b) emergence and mortality of larvae dewatered in a laboratory; and (c) bias, precision, and...
Authors
Julianne E. Harris, Joseph J. Skalicky, Theresa L. Liedtke, Lisa K. Weiland, Benjamin J. Clemens, Ann E. Gray

Modeling soil porewater salinity in mangrove forests (Everglades, Florida, USA) impacted by hydrological restoration and a warming climate Modeling soil porewater salinity in mangrove forests (Everglades, Florida, USA) impacted by hydrological restoration and a warming climate

Hydrology is a critical driver controlling mangrove wetlands structural and functional attributes at different spatial and temporal scales. Yet, human activities have negatively affected hydrology, causing mangrove diebacks and coverage loss worldwide. In fact, the assessment of mangrove water budgets, impacted by natural and human disturbances, is limited due to a lack of long-term data...
Authors
Xiaochen Zhao, Victor H. Rivera-Monroy, Hongqing Wang, Zuo Xue, Cheng-Feng Tsai, C. S. Willson, E. Castañeda-Moya, Robert R. Twilley

Climate- versus geographic-dependent patterns in the spatial distribution ofmacroinvertebrate assemblages in New World depressional wetlands Climate- versus geographic-dependent patterns in the spatial distribution ofmacroinvertebrate assemblages in New World depressional wetlands

Analyses of biota at lower latitudes may presage impacts of climate change on biota at higher latitudes. Macroinvertebrate assemblages in depressional wetlands may be especially sensitive to climate change because weather‐related precipitation and evapotranspiration are dominant ecological controls on habitats, and organisms of depressional wetlands are temperature‐sensitive ectotherms...
Authors
C. Stenert, M.M. Pires, L.B. Epele, M.G. Grech, L. Maltchik, Kyle McLean, David M. Mushet, D.P. Batzer
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