Publications
This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.
Filter Total Items: 42719
Landscape-scale processes influence riparian plant composition along a regulated river Landscape-scale processes influence riparian plant composition along a regulated river
Hierarchical frameworks are useful constructs when exploring landscape- and local-scale factors affecting patterns of vegetation in riparian areas. In drylands, which have steep environmental gradients and high habitat heterogeneity, landscape-scale variables, such as climate, can change rapidly along a river's course, affecting the relative influence of environmental variables at...
Authors
Emily C. Palmquist, Barbara Ralston, David M. Merritt, Patrick B. Shafroth
Best practices for assessing forage fish fisheries-seabird resource competition Best practices for assessing forage fish fisheries-seabird resource competition
Worldwide, in recent years capture fisheries targeting lower-trophic level forage fish and euphausiid crustaceans have been substantial (∼20 million metric tons [MT] annually). Landings of forage species are projected to increase in the future, and this harvest may affect marine ecosystems and predator-prey interactions by removal or redistribution of biomass central to pelagic food webs...
Authors
William J. Sydeman, Sarah Ann Thompson, Tycho Anker-Nilssen, Mayumi L. Arimitsu, Ashley Bennison, Sophie Bertrand, Philipp Boersch-Supan, Charlotte Boyd, Nicole C. Bransome, Robert J.M. Crawford, Francis Daunt, Robert W. Furness, Dimas Gianuca, Amanda Gladics, Laura Koehn, Jennifer W. Lang, Elizabeth Loggerwell, Taryn L. Morris, Elizabeth M. Phillips, Jennifer Provencher, Andre E. Punt, Claire Saraux, Lynne Shannon, Richard B. Sherley, Alejandro Simeone, Ross M. Wanless, Sarah Wanless, Stephani Zador
A new framework for analysing automated acoustic species detection data: Occupancy estimation and optimization of recordings post-processing A new framework for analysing automated acoustic species detection data: Occupancy estimation and optimization of recordings post-processing
The development and use of automated species-detection technologies, such as acoustic recorders, for monitoring wildlife are rapidly expanding. Automated classification algorithms provide a cost- and time-effective means to process information-rich data, but often at the cost of additional detection errors. Appropriate methods are necessary to analyse such data while dealing with the...
Authors
Thierry A. Chambert, J. Hardin Waddle, David A.W. Miller, Susan C. Walls, James D. Nichols
At the end of the line: independent overwater colonizations of the Solomon Islands by a hyperdiverse trans-Wallacean lizard lineage (Cyrtodactylus: Gekkota: Squamata) At the end of the line: independent overwater colonizations of the Solomon Islands by a hyperdiverse trans-Wallacean lizard lineage (Cyrtodactylus: Gekkota: Squamata)
The islands of East Melanesia have generated key insights into speciation processes and community assembly. However, when and how these islands began to form, emerge and accumulate endemic taxa remains poorly understood. Here, we show that two divergent lineages within the world’s most diverse genus of geckos (Cyrtodactylus) occur in the Solomon Islands. One large-bodied species is...
Authors
Paul M. Oliver, Scott L Travers, Jonathan Q. Richmond, Patrick Pikacha, Robert N. Fisher
Plastic ingestion by Black-footed Albatross Phoebastria nigripes from Kure Atoll, Hawai'i: Linking chick diet remains and parental at-sea foraging distributions Plastic ingestion by Black-footed Albatross Phoebastria nigripes from Kure Atoll, Hawai'i: Linking chick diet remains and parental at-sea foraging distributions
We quantified the incidence (percentage of samples with plastic) and loads (mass, volume) of four plastic types (fragments, line, sheet, foam) ingested by Black-footed Albatross Phoebastria nigripes chicks raised on Kure Atoll, the westernmost Hawaiian colony. All 25 samples contained plastic, mostly in the form of foam and line. On average (± SD), boluses and stomachs contained 28.2 ±...
Authors
K. David Hyrenbach, Michelle M. Hester, Josh Adams, Andrew J. Titmus, Pam Michael, Travis Wahl, Chih-Wei Chang, Amarisa Marie, Cynthia Vanderlip
Where can wolves live and how can we live with them? Where can wolves live and how can we live with them?
In the contiguous 48 United States, southern Canada, and in Europe, wolves (Canis lupus) have greatly increased and expanded their range during the past few decades.They are prolific, disperse long distances, readily recolonize new areas where humans allow them, and are difficult to control when populations become established.Because wolves originally lived nearly everywhere throughout...
Authors
L. David Mech
Extinguishing a learned response in a free-ranging gray wolf (Canis lupus) Extinguishing a learned response in a free-ranging gray wolf (Canis lupus)
A free-ranging Gray Wolf (Canis lupus), habituated to human presence (the author) on Ellesmere Island, Canada, learned to anticipate experimental feeding by a human, became impatient, persistent, and bold and exhibited stalking behaviour toward the food source. Only after the author offered the wolf about 90 clumps of dry soil over a period of 45 minutes in three bouts, did the wolf give...
Authors
L. David Mech
A probe-based quantitative PCR assay for detecting Tetracapsuloides bryosalmonae in fish tissue and environmental DNA water samples A probe-based quantitative PCR assay for detecting Tetracapsuloides bryosalmonae in fish tissue and environmental DNA water samples
A probe-based quantitative real-time PCR assay was developed to detect Tetracapsuloides bryosalmonae, which causes proliferative kidney disease in salmonid fish, in kidney tissue and environmental DNA (eDNA) water samples. The limits of detection and quantification were 7 and 100 DNA copies for calibration standards and T. bryosalmonae was reliably detected down to 100 copies in tissue...
Authors
Patrick R. Hutchins, Adam J. Sepulveda, Renee Martin, Lacey Hopper
Estimating vegetation biomass and cover across large plots in shrub and grass dominated drylands using terrestrial lidar and machine learning Estimating vegetation biomass and cover across large plots in shrub and grass dominated drylands using terrestrial lidar and machine learning
Terrestrial laser scanning (TLS) has been shown to enable an efficient, precise, and non-destructive inventory of vegetation structure at ranges up to hundreds of meters. We developed a method that leverages TLS collections with machine learning techniques to model and map canopy cover and biomass of several classes of short-stature vegetation across large plots. We collected high...
Authors
Kyle E. Anderson, Nancy F. Glenn, Lucas P. Spaete, Douglas J. Shinneman, David S. Pilliod, Robert Arkle, Susan McIlroy, DeWayne R. Derryberry
Quantile regression applications in ecology and the environmental sciences Quantile regression applications in ecology and the environmental sciences
No abstract available.
Authors
Brian S. Cade
Climate change and alpine stream biology: progress, challenges, and opportunities for the future Climate change and alpine stream biology: progress, challenges, and opportunities for the future
In alpine regions worldwide, climate change is dramatically altering ecosystems and affecting biodiversity in many ways. For streams, receding alpine glaciers and snowfields, paired with altered precipitation regimes, are driving shifts in hydrology, species distributions, basal resources, and threatening the very existence of some habitats and biota. Alpine streams harbour substantial...
Authors
Scott Hotaling, Debra S. Finn, J. Joseph Giersch, David W. Weisrock, Dean Jacobsen
Spatially explicit population estimates for black bears based on cluster sampling Spatially explicit population estimates for black bears based on cluster sampling
We estimated abundance and density of the 5 major black bear (Ursus americanus) subpopulations (i.e., Eglin, Apalachicola, Osceola, Ocala-St. Johns, Big Cypress) in Florida, USA with spatially explicit capture-mark-recapture (SCR) by extracting DNA from hair samples collected at barbed-wire hair sampling sites. We employed a clustered sampling configuration with sampling sites arranged...
Authors
J. Humm, J. Walter McCown, B.K. Scheick, Joseph D. Clark