Publications
This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.
Filter Total Items: 42712
A effective DNA vaccine against diverse genotype J infectious hematopoietic necrosis virus strains prevalent in China A effective DNA vaccine against diverse genotype J infectious hematopoietic necrosis virus strains prevalent in China
Infectious hematopoietic necrosis virus (IHNV) is the most important pathogen threatening the aquaculture of salmonid fish in China. In this study, a DNA vaccine, designated pIHNch-G, was constructed with the glycoprotein (G) gene of a Chinese IHNV isolate SD-12 (also called Sn1203) of genotype J. The minimal dose of vaccine required, the expression of the Mx-1 gene in the muscle...
Authors
Liming Xu, Jingzhuang Zhao, Miao Liu, Gael Kurath, Guangming Ren, Scott E. LaPatra, Jiasheng Yin, Hongbai Liu, Jian Feng, Tongyan Lu
Geographic variation in host fish use and larval metamorphosis for the endangered dwarf wedgemussel Geographic variation in host fish use and larval metamorphosis for the endangered dwarf wedgemussel
Host fishes play a crucial role in survival and dispersal of freshwater mussels (Unionoida), particularly rare unionids at conservation risk. Intraspecific variation in host use is not well understood for many mussels, including the endangered dwarf wedgemussel (Alasmidonta heterodon) in the USA.Host suitability of 33 fish species for dwarf wedgemussel glochidia (larvae) from the...
Authors
Barbara St. John White, C. Paola Ferreri, William A. Lellis, Barry J. Wicklow, Jeffrey C. Cole
Micronuclei and other erythrocyte nuclear abnormalities in fishes from the Great Lakes Basin, USA Micronuclei and other erythrocyte nuclear abnormalities in fishes from the Great Lakes Basin, USA
Biological markers (biomarkers) sensitive to genotoxic and mutagenic contamination in fishes are widely used to identify exposure effects in aquatic environments. The micronucleus assay was incorporated into a suite of indicators to assess exposure to genotoxic and mutagenic contamination at five Great Lakes Areas of Concern (AOCs), as well as one non-AOC (reference) site. The assay...
Authors
Ryan P. Braham, Vicki S. Blazer, Cassidy H. Shaw, Patricia M. Mazik
Fine-scale acoustic telemetry reveals unexpected lake trout, Salvelinus namaycush, spawning habitats in northern Lake Huron, North America Fine-scale acoustic telemetry reveals unexpected lake trout, Salvelinus namaycush, spawning habitats in northern Lake Huron, North America
Previous studies of lake trout, Salvelinus namaycush, spawning habitat in the Laurentian Great Lakes have used time- and labour-intensive survey methods and have focused on areas with historic observations of spawning aggregations and on habitats prejudged by researchers to be suitable for spawning. As an alternative, we used fine-scale acoustic telemetry to locate, describe and compare...
Authors
Thomas Binder, Steve A. Farha, Henry T. Thompson, Christopher Holbrook, Roger A. Bergstedt, Stephen Riley, Charles R. Bronte, Ji He, Charles C. Krueger
Biomonitoring using invasive species in a large Lake: Dreissena distribution maps hypoxic zones Biomonitoring using invasive species in a large Lake: Dreissena distribution maps hypoxic zones
Due to cultural eutrophication and global climate change, an exponential increase in the number and extent of hypoxic zones in marine and freshwater ecosystems has been observed in the last few decades. Hypoxia, or low dissolved oxygen (DO) concentrations, can produce strong negative ecological impacts and, therefore, is a management concern. We measured biomass and densities of...
Authors
Alexander Y. Karatayev, Lyubov E. Burlakova, Knut Mehler, Serghei A. Bocaniov, Paris D. Collingsworth, Glenn Warren, Richard T. Kraus, Elizabeth K. Hinchey
Southern Great Plains Rapid Ecoregional assessment—Volume I. Ecological communities Southern Great Plains Rapid Ecoregional assessment—Volume I. Ecological communities
The Southern Great Plains Rapid Ecoregional Assessment was conducted in partnership with the Bureau of Land Management (BLM) and the Great Plains Landscape Conservation Cooperative. The overall goal of the Rapid Ecoregional Assessments (REAs) is to compile and synthesize regional datasets to facilitate evaluation of the cumulative effects of change agents on priority ecological...
Authors
Gordon C. Reese, Lucy Burris, Natasha B. Carr, Ian I.F. Leinwand, Cynthia P. Melcher
Long-term persistence and fire resilience of oak shrubfields in dry conifer forests of northern New Mexico Long-term persistence and fire resilience of oak shrubfields in dry conifer forests of northern New Mexico
Extensive high-severity fires are creating large shrubfields in many dry conifer forests of the interior western USA, raising concerns about forest-to-shrub conversion. This study evaluates the role of disturbance in shrubfield formation, maintenance and succession in the Jemez Mountains, New Mexico. We compared the environmental conditions of extant Gambel oak (Quercus gambelii)...
Authors
Christopher H. Guiterman, Ellis Margolis, Craig D. Allen, Donald A. Falk, Thomas W. Swetnam
Health and condition of endangered young-of-the-year Lost River and Shortnose suckers relative to water quality in Upper Klamath Lake, Oregon, 2014–2015 Health and condition of endangered young-of-the-year Lost River and Shortnose suckers relative to water quality in Upper Klamath Lake, Oregon, 2014–2015
Most mortality of endangered Lost River (Deltistes luxatus) and shortnose (Chasmistes brevirostris) suckers in Upper Klamath Lake, Oregon, occurs within the first year of life. Juvenile suckers in Clear Lake Reservoir, California, survive longer and may even recruit to the spawning populations. In a previous (2013–2014) study, the health and condition of juvenile suckers and the dynamics...
Authors
Summer M. Burdick, Carla M. Conway, Diane G. Elliott, Marshal S. Hoy, Amari Dolan-Caret, Carl O. Ostberg
Endemic chronic wasting disease causes mule deer population decline in Wyoming Endemic chronic wasting disease causes mule deer population decline in Wyoming
Chronic wasting disease (CWD) is a fatal transmissible spongiform encephalopathy affecting white-tailed deer (Odocoileus virginianus), mule deer (Odocoileus hemionus), Rocky Mountain elk (Cervus elaphus nelsoni), and moose (Alces alces shirasi) in North America. In southeastern Wyoming average annual CWD prevalence in mule deer exceeds 20% and appears to contribute to regional population...
Authors
Melia DeVivo, David R. Edmunds, Matthew J. Kauffman, Brant A. Schumaker, Justin Binfet, Terry J. Kreeger, Bryan J. Richards, Hermann M. Schatzl, Todd Cornish
Identifying species conservation strategies to reduce disease-associated declines Identifying species conservation strategies to reduce disease-associated declines
Emerging infectious diseases (EIDs) are a salient threat to many animal taxa, causing local and global extinctions, altering communities and ecosystem function. The EID chytridiomycosis is a prominent driver of amphibian declines, which is caused by the fungal pathogen Batrachochytrium dendrobatidis (Bd). To guide conservation policy, we developed a predictive decision-analytic model...
Authors
Brian D. Gerber, Sarah J. Converse, Erin L. Muths, Harry J. Crockett, Brittany A. Mosher, Larissa L. Bailey
New interventions are needed to save coral reefs New interventions are needed to save coral reefs
Since 2014, coral reefs worldwide have been subjected to the most extensive, prolonged and damaging heat wave in recorded history1. Large sections of Australia’s Great Barrier Reef (GBR) bleached in response to heat stress in 2016 and 2017 — the first back-to-back event on record. Such severe coral bleaching results in widespread loss of reef habitat and biodiversity. Globally, we are...
Authors
Ken Anthony, Line K. Bay, Robert Costanza, Jennifer Firn, John Gunn, Peter Harrison, Andrew Heyward, Petra Lundgren, David Mead, Tom Moore, Peter J. Mumby, Madeleine J. H. van Oppen, John Robertson, Michael C. Runge, David J. Suggett, Britta Schaffelke, David Wachenfeld, Terry Walshe
A comparison of four porewater sampling methods for metal mixtures and dissolved organic carbon and the implications for sediment toxicity evaluations A comparison of four porewater sampling methods for metal mixtures and dissolved organic carbon and the implications for sediment toxicity evaluations
Evaluations of sediment quality conditions are commonly conducted using whole-sediment chemistry analyses but can be enhanced by evaluating multiple lines of evidence, including measures of the bioavailable forms of contaminants. In particular, porewater chemistry data provide information that is directly relevant for interpreting sediment toxicity data. Various methods for sampling...
Authors
Danielle M. Cleveland, William G. Brumbaugh, Donald D. MacDonald