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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42707

An evaluation of the efficacy of using environmental DNA (eDNA) to detect giant gartersnakes (Thamnophis gigas) An evaluation of the efficacy of using environmental DNA (eDNA) to detect giant gartersnakes (Thamnophis gigas)

Detecting populations of rare or cryptic species is essential for their conservation. For species like giant gartersnakes (Thamnophis gigas), conventional survey methods can be expensive and inefficient. These sampling difficulties might be overcome by modern techniques that detect deoxyribonucleic acid (DNA) shed by organisms into the environment (eDNA). We evaluated the efficacy of...
Authors
Brian J. Halstead, Dustin A. Wood, Lizabeth Bowen, Shannon C. Waters-Dynes, Amy G. Vandergast, Julia S. Ersan, Shannon M. Skalos, Michael L. Casazza

Riparian plant composition along hydrologic gradients in a dryland river basin and implications for a warming climate Riparian plant composition along hydrologic gradients in a dryland river basin and implications for a warming climate

Droughts in dryland regions on all continents are expected to increase in severity and duration under future climate projections. In dryland regions, it is likely that minimum streamflow will decrease with some perennial streams shifting to intermittent flow under climate-driven changes in precipitation and runoff and increases in temperature. Decreasing base flow and shifting flow...
Authors
Lindsay Reynolds, Patrick B. Shafroth

Minimizing effects of methodological decisions on interpretation and prediction in species distribution studies: An example with background selection Minimizing effects of methodological decisions on interpretation and prediction in species distribution studies: An example with background selection

Evaluating the conditions where a species can persist is an important question in ecology both to understand tolerances of organisms and to predict distributions across landscapes. Presence data combined with background or pseudo-absence locations are commonly used with species distribution modeling to develop these relationships. However, there is not a standard method to generate...
Authors
Catherine S. Jarnevich, Marian Talbert, Jeffrey T. Morisette, Cameron L. Aldridge, Cynthia Brown, Sunil Kumar, Daniel J. Manier, Colin Talbert, Tracy R. Holcombe

Refining the cheatgrass–fire cycle in the Great Basin: Precipitation timing and fine fuel composition predict wildfire trends Refining the cheatgrass–fire cycle in the Great Basin: Precipitation timing and fine fuel composition predict wildfire trends

Larger, more frequent wildfires in arid and semi-arid ecosystems have been associated with invasion by non-native annual grasses, yet a complete understanding of fine fuel development and subsequent wildfire trends is lacking. We investigated the complex relationships among weather, fine fuels, and fire in the Great Basin, USA. We first modeled the annual and time-lagged effects of...
Authors
David S. Pilliod, Justin L. Welty, Robert Arkle

USGS microbiome research USGS microbiome research

Microbiomes are the communities of microorganisms (for example, bacteria, viruses, and fungi) that live on, in, and around people, plants, animals, soil, water, and the atmosphere. Microbiomes are active in the functioning of diverse ecosystems, for instance, by influencing water quality, nutrient acquisition 
and stress tolerance in plants, and stability of soil and aquatic environments
Authors
Christina A. Kellogg, M. Camille Hopkins

Introduced American Bullfrog distribution and diets in Grand Teton National Park Introduced American Bullfrog distribution and diets in Grand Teton National Park

Introduced American Bullfrogs (Lithobates catesbeianus) have been present in Grand Teton National Park since approximately the 1950s, but little is known about their distribution and potential impacts. In this study, we surveyed the current bullfrog distribution and spatial overlap with sympatric native amphibians in the park, and characterized post-metamorphic bullfrog diets from July –...
Authors
Lauren M Flynn, Tess Marie Kreofsky, Adam J. Sepulveda

The influence of soil resources and plant traits on invasion and restoration in a subtropical woodland The influence of soil resources and plant traits on invasion and restoration in a subtropical woodland

It has been shown in some cases that nitrogen (N) addition to soil will increase abundance of plant invaders because many invaders have traits that promote rapid growth in response to high resource supply. Similarly, it has been suggested, and sometimes shown, that decreasing soil N via carbon (C) additions can facilitate native species recovery. Yet all species are unlikely to respond...
Authors
Stephanie G. Yelenik, Carla M. D’Antonio, Elizabeth August-Schmidt

Biogeographical variation of plumage coloration in the sexually dichromatic Hawai‘i ‘Amakihi (Chlorodrepanis virens) Biogeographical variation of plumage coloration in the sexually dichromatic Hawai‘i ‘Amakihi (Chlorodrepanis virens)

Plumage coloration in birds can be of major importance to mate selection, social signaling, or predator avoidance. Variations in plumage coloration related to sex, age class, or seasons have been widely studied, but the effect of other factors such as climate is less known. In this study, we examine how carotenoid-based plumage coloration and sexual dichromatism of the Hawai‘i ‘Amakihi
Authors
Jacqueline M. Gaudioso-Levita, Patrick J. Hart, Dennis Lapointe, Anne Veillet, Esther Sebastian-Gonzalez

Coming to terms about describing Golden Eagle reproduction Coming to terms about describing Golden Eagle reproduction

Clearly defined terms are essential for reporting and understanding research findings, and inconsistent terminology can complicate efforts to compare findings from different studies. In this article, we reiterate and clarify recommended terms for describing Golden Eagle (Aquila chrysaetos) territory occupancy and reproduction. Several authors have provided recommendations for reporting...
Authors
Karen Steenhof, Michael N. Kochert, Carol L. McIntyre, Jessi L. Brown

Local adaptation in Trinidadian guppies alters stream ecosystem structure at landscape scales despite high environmental variability Local adaptation in Trinidadian guppies alters stream ecosystem structure at landscape scales despite high environmental variability

While previous studies have shown that evolutionary divergence alters ecological processes in small-scale experiments, a major challenge is to assess whether such evolutionary effects are important in natural ecosystems at larger spatial scales. At the landscape scale, across eight streams in the Caroni drainage, we found that the presence of locally adapted populations of guppies...
Authors
Troy N. Simon, Ronald D. Bassar, Andrew J. Binderup, Alex S. Flecker, Mary Freeman, James F. Gill, Michael C. Marshall, Steve A. Thomas, Joseph Travis, David N. Reznick, Catherine M. Pringle

Camera traps reveal an apparent mutualism between a common mesocarnivore and an endangered ungulate Camera traps reveal an apparent mutualism between a common mesocarnivore and an endangered ungulate

Camera traps are commonly used to study mammal ecology and they occasionally capture previously undocumented species interactions. The key deer (Odocoileus virginianus clavium) is an endangered endemic subspecies of the Florida Keys, where it exists with few predators. We obtained a camera trap sequence of 80 photos in which a key deer interacted with two northern raccoons (Procyon lotor...
Authors
Michael V. Cove, Andrew S. Maurer, Allan F. O’Connell
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